Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC29.52■■■□□ 2.32
CIITAP33076 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC29.51■■■□□ 2.32
CIITAP33076 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC29.5■■■□□ 2.31
CIITAP33076 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CIITAP33076 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
CIITAP33076 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
CIITAP33076 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC29.49■■■□□ 2.31
CIITAP33076 ABCB10P1-201ENST00000614297 2181 ntBASIC29.48■■■□□ 2.31
CIITAP33076 CALM3-209ENST00000597743 577 ntTSL 4 BASIC29.48■■■□□ 2.31
CIITAP33076 LINC00273-201ENST00000539813 1452 ntBASIC29.48■■■□□ 2.31
CIITAP33076 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
CIITAP33076 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC29.47■■■□□ 2.31
CIITAP33076 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
CIITAP33076 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC29.46■■■□□ 2.31
CIITAP33076 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
CIITAP33076 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC29.45■■■□□ 2.31
CIITAP33076 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC29.45■■■□□ 2.3
CIITAP33076 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.3
CIITAP33076 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
CIITAP33076 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC29.44■■■□□ 2.3
CIITAP33076 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC29.43■■■□□ 2.3
CIITAP33076 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC29.42■■■□□ 2.3
CIITAP33076 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC29.41■■■□□ 2.3
CIITAP33076 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
CIITAP33076 MIR7108-201ENST00000614319 87 ntBASIC29.41■■■□□ 2.3
CIITAP33076 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.41■■■□□ 2.3
CIITAP33076 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC29.4■■■□□ 2.3
CIITAP33076 LINC01971-201ENST00000617888 1048 ntBASIC29.4■■■□□ 2.3
CIITAP33076 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
CIITAP33076 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CIITAP33076 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC29.39■■■□□ 2.3
CIITAP33076 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
CIITAP33076 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
CIITAP33076 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC29.38■■■□□ 2.29
CIITAP33076 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CIITAP33076 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC29.38■■■□□ 2.29
CIITAP33076 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC29.38■■■□□ 2.29
CIITAP33076 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC29.38■■■□□ 2.29
CIITAP33076 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC29.37■■■□□ 2.29
CIITAP33076 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CIITAP33076 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
CIITAP33076 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC29.36■■■□□ 2.29
CIITAP33076 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC29.36■■■□□ 2.29
CIITAP33076 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CIITAP33076 AC135983.2-203ENST00000454486 1613 ntBASIC29.35■■■□□ 2.29
CIITAP33076 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
CIITAP33076 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CIITAP33076 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC29.34■■■□□ 2.29
CIITAP33076 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC29.34■■■□□ 2.29
CIITAP33076 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
CIITAP33076 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC29.33■■■□□ 2.29
CIITAP33076 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC29.33■■■□□ 2.29
CIITAP33076 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC29.32■■■□□ 2.28
CIITAP33076 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
CIITAP33076 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC29.32■■■□□ 2.28
CIITAP33076 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC29.32■■■□□ 2.28
CIITAP33076 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
CIITAP33076 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC29.32■■■□□ 2.28
CIITAP33076 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
CIITAP33076 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.3■■■□□ 2.28
CIITAP33076 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
CIITAP33076 DUX4L11-201ENST00000611504 1267 ntBASIC29.29■■■□□ 2.28
CIITAP33076 DUX4L12-201ENST00000614593 1267 ntBASIC29.29■■■□□ 2.28
CIITAP33076 DUX4L14-201ENST00000621227 1267 ntBASIC29.29■■■□□ 2.28
CIITAP33076 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC29.29■■■□□ 2.28
CIITAP33076 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC29.29■■■□□ 2.28
CIITAP33076 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
CIITAP33076 WHAMMP2-203ENST00000563942 1603 ntBASIC29.28■■■□□ 2.28
CIITAP33076 AP004833.2-201ENST00000532228 1454 ntBASIC29.28■■■□□ 2.28
CIITAP33076 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
CIITAP33076 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CIITAP33076 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC29.27■■■□□ 2.28
CIITAP33076 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC29.27■■■□□ 2.28
CIITAP33076 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC29.27■■■□□ 2.28
CIITAP33076 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
CIITAP33076 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC29.25■■■□□ 2.27
CIITAP33076 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
CIITAP33076 AL139393.2-201ENST00000608721 2025 ntBASIC29.25■■■□□ 2.27
CIITAP33076 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CIITAP33076 PVT1-219ENST00000523427 938 ntTSL 3 BASIC29.24■■■□□ 2.27
CIITAP33076 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CIITAP33076 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CIITAP33076 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC29.23■■■□□ 2.27
CIITAP33076 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.23■■■□□ 2.27
CIITAP33076 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.22■■■□□ 2.27
CIITAP33076 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC29.22■■■□□ 2.27
CIITAP33076 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC29.21■■■□□ 2.27
CIITAP33076 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.21■■■□□ 2.27
CIITAP33076 RNF166-209ENST00000567844 633 ntTSL 5 BASIC29.21■■■□□ 2.27
CIITAP33076 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC29.2■■■□□ 2.27
CIITAP33076 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
CIITAP33076 DUX4L13-201ENST00000554103 1267 ntBASIC29.2■■■□□ 2.26
CIITAP33076 DUX4L15-201ENST00000611059 1267 ntBASIC29.2■■■□□ 2.26
CIITAP33076 DUX4L23-201ENST00000615195 1269 ntBASIC29.2■■■□□ 2.26
CIITAP33076 DUX4L24-201ENST00000617576 1269 ntBASIC29.2■■■□□ 2.26
CIITAP33076 DUX4L22-201ENST00000618238 1269 ntBASIC29.2■■■□□ 2.26
CIITAP33076 DUX4L20-201ENST00000619712 1269 ntBASIC29.2■■■□□ 2.26
CIITAP33076 DUX4L21-201ENST00000622058 1269 ntBASIC29.2■■■□□ 2.26
CIITAP33076 DUX4L10-201ENST00000622460 1267 ntBASIC29.2■■■□□ 2.26
CIITAP33076 DUX4L25-201ENST00000624915 1269 ntBASIC29.2■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms