Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 GPX1-201ENST00000419349 1106 ntBASIC29.46■■■□□ 2.31
PGK1P00558 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
PGK1P00558 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
PGK1P00558 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC29.45■■■□□ 2.31
PGK1P00558 AL161658.1-201ENST00000623641 1967 ntBASIC29.45■■■□□ 2.31
PGK1P00558 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC29.45■■■□□ 2.31
PGK1P00558 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC29.45■■■□□ 2.31
PGK1P00558 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
PGK1P00558 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
PGK1P00558 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
PGK1P00558 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
PGK1P00558 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
PGK1P00558 TPT1-202ENST00000379055 948 ntTSL 2 BASIC29.42■■■□□ 2.3
PGK1P00558 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.3
PGK1P00558 ABHD17AP5-201ENST00000580133 923 ntBASIC29.42■■■□□ 2.3
PGK1P00558 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
PGK1P00558 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC29.41■■■□□ 2.3
PGK1P00558 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC29.41■■■□□ 2.3
PGK1P00558 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC29.4■■■□□ 2.3
PGK1P00558 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
PGK1P00558 LINC00273-201ENST00000539813 1452 ntBASIC29.4■■■□□ 2.3
PGK1P00558 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
PGK1P00558 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC29.38■■■□□ 2.29
PGK1P00558 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC29.38■■■□□ 2.29
PGK1P00558 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC29.37■■■□□ 2.29
PGK1P00558 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
PGK1P00558 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.37■■■□□ 2.29
PGK1P00558 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC29.36■■■□□ 2.29
PGK1P00558 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
PGK1P00558 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
PGK1P00558 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC29.35■■■□□ 2.29
PGK1P00558 CEP120-209ENST00000515110 606 ntTSL 3 BASIC29.35■■■□□ 2.29
PGK1P00558 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC29.35■■■□□ 2.29
PGK1P00558 RNF126P1-201ENST00000567452 1320 ntBASIC29.35■■■□□ 2.29
PGK1P00558 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC29.34■■■□□ 2.29
PGK1P00558 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
PGK1P00558 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
PGK1P00558 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
PGK1P00558 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC29.33■■■□□ 2.29
PGK1P00558 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
PGK1P00558 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC29.32■■■□□ 2.28
PGK1P00558 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
PGK1P00558 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC29.3■■■□□ 2.28
PGK1P00558 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC29.29■■■□□ 2.28
PGK1P00558 AC010864.1-201ENST00000609407 1511 ntBASIC29.29■■■□□ 2.28
PGK1P00558 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
PGK1P00558 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC29.28■■■□□ 2.28
PGK1P00558 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC29.28■■■□□ 2.28
PGK1P00558 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
PGK1P00558 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
PGK1P00558 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC29.28■■■□□ 2.28
PGK1P00558 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC29.27■■■□□ 2.28
PGK1P00558 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC29.27■■■□□ 2.28
PGK1P00558 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
PGK1P00558 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
PGK1P00558 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
PGK1P00558 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
PGK1P00558 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC29.23■■■□□ 2.27
PGK1P00558 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC29.22■■■□□ 2.27
PGK1P00558 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC29.22■■■□□ 2.27
PGK1P00558 AC022413.1-201ENST00000624602 984 ntBASIC29.22■■■□□ 2.27
PGK1P00558 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
PGK1P00558 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC29.2■■■□□ 2.27
PGK1P00558 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
PGK1P00558 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
PGK1P00558 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC29.2■■■□□ 2.26
PGK1P00558 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
PGK1P00558 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC29.19■■■□□ 2.26
PGK1P00558 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
PGK1P00558 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
PGK1P00558 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC29.18■■■□□ 2.26
PGK1P00558 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC29.18■■■□□ 2.26
PGK1P00558 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
PGK1P00558 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC29.18■■■□□ 2.26
PGK1P00558 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC29.17■■■□□ 2.26
PGK1P00558 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC29.17■■■□□ 2.26
PGK1P00558 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
PGK1P00558 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC29.15■■■□□ 2.26
PGK1P00558 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
PGK1P00558 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC29.14■■■□□ 2.26
PGK1P00558 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC29.14■■■□□ 2.26
PGK1P00558 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
PGK1P00558 NTF6A-201ENST00000591175 560 ntBASIC29.13■■■□□ 2.25
PGK1P00558 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC29.13■■■□□ 2.25
PGK1P00558 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC29.13■■■□□ 2.25
PGK1P00558 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
PGK1P00558 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC29.12■■■□□ 2.25
PGK1P00558 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC29.12■■■□□ 2.25
PGK1P00558 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC29.12■■■□□ 2.25
PGK1P00558 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
PGK1P00558 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
PGK1P00558 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC29.11■■■□□ 2.25
PGK1P00558 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC29.11■■■□□ 2.25
PGK1P00558 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
PGK1P00558 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
PGK1P00558 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
PGK1P00558 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
PGK1P00558 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
PGK1P00558 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC29.09■■■□□ 2.25
PGK1P00558 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC29.09■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 9.6 ms