Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CBX4O00257 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC26.6■■□□□ 1.85
CBX4O00257 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CBX4O00257 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CBX4O00257 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.57■■□□□ 1.84
CBX4O00257 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CBX4O00257 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC26.56■■□□□ 1.84
CBX4O00257 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
CBX4O00257 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.55■■□□□ 1.84
CBX4O00257 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.55■■□□□ 1.84
CBX4O00257 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC26.55■■□□□ 1.84
CBX4O00257 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
CBX4O00257 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
CBX4O00257 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CBX4O00257 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
CBX4O00257 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC26.53■■□□□ 1.84
CBX4O00257 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CBX4O00257 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CBX4O00257 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC26.53■■□□□ 1.84
CBX4O00257 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC26.52■■□□□ 1.84
CBX4O00257 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC26.52■■□□□ 1.84
CBX4O00257 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
CBX4O00257 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CBX4O00257 CALM3-209ENST00000597743 577 ntTSL 4 BASIC26.5■■□□□ 1.83
CBX4O00257 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
CBX4O00257 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
CBX4O00257 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
CBX4O00257 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
CBX4O00257 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC26.48■■□□□ 1.83
CBX4O00257 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
CBX4O00257 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CBX4O00257 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC26.47■■□□□ 1.83
CBX4O00257 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.47■■□□□ 1.83
CBX4O00257 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
CBX4O00257 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC26.47■■□□□ 1.83
CBX4O00257 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CBX4O00257 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.46■■□□□ 1.83
CBX4O00257 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC26.46■■□□□ 1.83
CBX4O00257 LINC00273-201ENST00000539813 1452 ntBASIC26.46■■□□□ 1.83
CBX4O00257 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
CBX4O00257 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
CBX4O00257 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.83
CBX4O00257 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
CBX4O00257 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC26.45■■□□□ 1.82
CBX4O00257 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
CBX4O00257 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
CBX4O00257 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26.45■■□□□ 1.82
CBX4O00257 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC26.44■■□□□ 1.82
CBX4O00257 LINC01971-201ENST00000617888 1048 ntBASIC26.44■■□□□ 1.82
CBX4O00257 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC26.43■■□□□ 1.82
CBX4O00257 RPS2-202ENST00000526522 924 ntTSL 2 BASIC26.43■■□□□ 1.82
CBX4O00257 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
CBX4O00257 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CBX4O00257 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC26.42■■□□□ 1.82
CBX4O00257 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.42■■□□□ 1.82
CBX4O00257 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
CBX4O00257 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CBX4O00257 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CBX4O00257 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
CBX4O00257 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CBX4O00257 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
CBX4O00257 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
CBX4O00257 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC26.39■■□□□ 1.82
CBX4O00257 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC26.39■■□□□ 1.82
CBX4O00257 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
CBX4O00257 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC26.39■■□□□ 1.81
CBX4O00257 DUX4L11-201ENST00000611504 1267 ntBASIC26.38■■□□□ 1.81
CBX4O00257 DUX4L12-201ENST00000614593 1267 ntBASIC26.38■■□□□ 1.81
CBX4O00257 DUX4L14-201ENST00000621227 1267 ntBASIC26.38■■□□□ 1.81
CBX4O00257 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CBX4O00257 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
CBX4O00257 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CBX4O00257 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CBX4O00257 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
CBX4O00257 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
CBX4O00257 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
CBX4O00257 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC26.37■■□□□ 1.81
CBX4O00257 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
CBX4O00257 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
CBX4O00257 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
CBX4O00257 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
CBX4O00257 RNF166-209ENST00000567844 633 ntTSL 5 BASIC26.35■■□□□ 1.81
CBX4O00257 AC135983.2-203ENST00000454486 1613 ntBASIC26.35■■□□□ 1.81
CBX4O00257 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
CBX4O00257 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.34■■□□□ 1.81
CBX4O00257 WHAMMP2-203ENST00000563942 1603 ntBASIC26.33■■□□□ 1.81
CBX4O00257 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26.32■■□□□ 1.8
CBX4O00257 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CBX4O00257 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CBX4O00257 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC26.31■■□□□ 1.8
CBX4O00257 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC26.31■■□□□ 1.8
CBX4O00257 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CBX4O00257 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CBX4O00257 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CBX4O00257 AL139393.2-201ENST00000608721 2025 ntBASIC26.29■■□□□ 1.8
CBX4O00257 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
CBX4O00257 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CBX4O00257 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CBX4O00257 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC26.29■■□□□ 1.8
CBX4O00257 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms