Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC18.87■□□□□ 0.61
SMKR1H3BMG3 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMKR1H3BMG3 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC18.87■□□□□ 0.61
SMKR1H3BMG3 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMKR1H3BMG3 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMKR1H3BMG3 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
SMKR1H3BMG3 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SMKR1H3BMG3 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMKR1H3BMG3 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMKR1H3BMG3 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMKR1H3BMG3 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC18.85■□□□□ 0.61
SMKR1H3BMG3 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC18.84■□□□□ 0.61
SMKR1H3BMG3 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SMKR1H3BMG3 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SMKR1H3BMG3 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SMKR1H3BMG3 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMKR1H3BMG3 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMKR1H3BMG3 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMKR1H3BMG3 AC006077.2-201ENST00000623591 457 ntBASIC18.82■□□□□ 0.6
SMKR1H3BMG3 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMKR1H3BMG3 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SMKR1H3BMG3 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMKR1H3BMG3 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SMKR1H3BMG3 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SMKR1H3BMG3 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC18.81■□□□□ 0.6
SMKR1H3BMG3 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SMKR1H3BMG3 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC18.81■□□□□ 0.6
SMKR1H3BMG3 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMKR1H3BMG3 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
SMKR1H3BMG3 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SMKR1H3BMG3 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMKR1H3BMG3 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMKR1H3BMG3 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC18.8■□□□□ 0.6
SMKR1H3BMG3 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMKR1H3BMG3 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SMKR1H3BMG3 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SMKR1H3BMG3 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SMKR1H3BMG3 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMKR1H3BMG3 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC18.79■□□□□ 0.6
SMKR1H3BMG3 BX255925.1-201ENST00000566954 1854 ntBASIC18.79■□□□□ 0.6
SMKR1H3BMG3 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SMKR1H3BMG3 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMKR1H3BMG3 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMKR1H3BMG3 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMKR1H3BMG3 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMKR1H3BMG3 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMKR1H3BMG3 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMKR1H3BMG3 EBPL-203ENST00000378270 579 ntTSL 2 BASIC18.77■□□□□ 0.6
SMKR1H3BMG3 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
SMKR1H3BMG3 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMKR1H3BMG3 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMKR1H3BMG3 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMKR1H3BMG3 DYNLL1-208ENST00000550178 581 ntBASIC18.76■□□□□ 0.59
SMKR1H3BMG3 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SMKR1H3BMG3 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMKR1H3BMG3 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMKR1H3BMG3 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
SMKR1H3BMG3 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMKR1H3BMG3 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC18.75■□□□□ 0.59
SMKR1H3BMG3 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SMKR1H3BMG3 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SMKR1H3BMG3 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC18.74■□□□□ 0.59
SMKR1H3BMG3 AL449106.1-201ENST00000608517 1980 ntBASIC18.74■□□□□ 0.59
SMKR1H3BMG3 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMKR1H3BMG3 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC18.74■□□□□ 0.59
SMKR1H3BMG3 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMKR1H3BMG3 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC18.73■□□□□ 0.59
SMKR1H3BMG3 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMKR1H3BMG3 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMKR1H3BMG3 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMKR1H3BMG3 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC18.72■□□□□ 0.59
SMKR1H3BMG3 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMKR1H3BMG3 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC18.72■□□□□ 0.59
SMKR1H3BMG3 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
SMKR1H3BMG3 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMKR1H3BMG3 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMKR1H3BMG3 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC18.71■□□□□ 0.59
SMKR1H3BMG3 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC18.71■□□□□ 0.59
SMKR1H3BMG3 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMKR1H3BMG3 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC18.71■□□□□ 0.59
SMKR1H3BMG3 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SMKR1H3BMG3 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SMKR1H3BMG3 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMKR1H3BMG3 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
SMKR1H3BMG3 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC18.7■□□□□ 0.58
SMKR1H3BMG3 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMKR1H3BMG3 PKM-203ENST00000389093 2279 ntTSL 5 BASIC18.7■□□□□ 0.58
SMKR1H3BMG3 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC18.7■□□□□ 0.58
SMKR1H3BMG3 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMKR1H3BMG3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMKR1H3BMG3 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMKR1H3BMG3 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
SMKR1H3BMG3 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMKR1H3BMG3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SMKR1H3BMG3 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SMKR1H3BMG3 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMKR1H3BMG3 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMKR1H3BMG3 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMKR1H3BMG3 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SMKR1H3BMG3 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms