Protein–RNA interactions for Protein: A0A0B4J264

TRAV38-1, T-cell receptor alpha variable 38-1 (Fragment), humanhuman

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV38-1A0A0B4J264 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC21.8■■□□□ 1.08
TRAV38-1A0A0B4J264 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC21.8■■□□□ 1.08
TRAV38-1A0A0B4J264 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC21.8■■□□□ 1.08
TRAV38-1A0A0B4J264 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAV38-1A0A0B4J264 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRAV38-1A0A0B4J264 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.79■■□□□ 1.08
TRAV38-1A0A0B4J264 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRAV38-1A0A0B4J264 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRAV38-1A0A0B4J264 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRAV38-1A0A0B4J264 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRAV38-1A0A0B4J264 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.78■■□□□ 1.08
TRAV38-1A0A0B4J264 AC127502.1-201ENST00000399971 1502 ntBASIC21.78■■□□□ 1.08
TRAV38-1A0A0B4J264 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRAV38-1A0A0B4J264 AC021231.2-201ENST00000594613 730 ntBASIC21.77■■□□□ 1.08
TRAV38-1A0A0B4J264 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV38-1A0A0B4J264 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.76■■□□□ 1.07
TRAV38-1A0A0B4J264 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV38-1A0A0B4J264 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV38-1A0A0B4J264 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV38-1A0A0B4J264 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC21.76■■□□□ 1.07
TRAV38-1A0A0B4J264 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV38-1A0A0B4J264 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV38-1A0A0B4J264 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV38-1A0A0B4J264 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV38-1A0A0B4J264 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV38-1A0A0B4J264 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV38-1A0A0B4J264 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.75■■□□□ 1.07
TRAV38-1A0A0B4J264 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
TRAV38-1A0A0B4J264 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
TRAV38-1A0A0B4J264 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
TRAV38-1A0A0B4J264 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV38-1A0A0B4J264 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
TRAV38-1A0A0B4J264 HGH1-207ENST00000628266 258 ntTSL 5 BASIC21.74■■□□□ 1.07
TRAV38-1A0A0B4J264 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
TRAV38-1A0A0B4J264 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.73■■□□□ 1.07
TRAV38-1A0A0B4J264 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC21.73■■□□□ 1.07
TRAV38-1A0A0B4J264 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRAV38-1A0A0B4J264 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRAV38-1A0A0B4J264 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRAV38-1A0A0B4J264 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV38-1A0A0B4J264 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV38-1A0A0B4J264 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV38-1A0A0B4J264 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRAV38-1A0A0B4J264 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV38-1A0A0B4J264 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV38-1A0A0B4J264 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
TRAV38-1A0A0B4J264 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV38-1A0A0B4J264 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV38-1A0A0B4J264 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV38-1A0A0B4J264 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV38-1A0A0B4J264 ABHD17AP4-201ENST00000411545 909 ntBASIC21.69■■□□□ 1.06
TRAV38-1A0A0B4J264 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC21.69■■□□□ 1.06
TRAV38-1A0A0B4J264 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV38-1A0A0B4J264 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
TRAV38-1A0A0B4J264 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC21.68■■□□□ 1.06
TRAV38-1A0A0B4J264 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
TRAV38-1A0A0B4J264 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV38-1A0A0B4J264 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC21.68■■□□□ 1.06
TRAV38-1A0A0B4J264 LINC00273-201ENST00000539813 1452 ntBASIC21.68■■□□□ 1.06
TRAV38-1A0A0B4J264 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
TRAV38-1A0A0B4J264 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV38-1A0A0B4J264 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV38-1A0A0B4J264 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV38-1A0A0B4J264 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV38-1A0A0B4J264 CALM3-209ENST00000597743 577 ntTSL 4 BASIC21.67■■□□□ 1.06
TRAV38-1A0A0B4J264 ABCB10P3-201ENST00000561950 2166 ntBASIC21.67■■□□□ 1.06
TRAV38-1A0A0B4J264 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
TRAV38-1A0A0B4J264 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
TRAV38-1A0A0B4J264 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV38-1A0A0B4J264 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.66■■□□□ 1.06
TRAV38-1A0A0B4J264 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
TRAV38-1A0A0B4J264 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.65■■□□□ 1.06
TRAV38-1A0A0B4J264 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.65■■□□□ 1.06
TRAV38-1A0A0B4J264 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV38-1A0A0B4J264 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV38-1A0A0B4J264 ZNRF2P2-203ENST00000454624 420 ntBASIC21.65■■□□□ 1.06
TRAV38-1A0A0B4J264 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC21.65■■□□□ 1.06
TRAV38-1A0A0B4J264 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV38-1A0A0B4J264 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV38-1A0A0B4J264 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV38-1A0A0B4J264 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV38-1A0A0B4J264 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV38-1A0A0B4J264 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.64■■□□□ 1.05
TRAV38-1A0A0B4J264 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV38-1A0A0B4J264 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.62■■□□□ 1.05
TRAV38-1A0A0B4J264 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV38-1A0A0B4J264 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV38-1A0A0B4J264 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV38-1A0A0B4J264 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC21.62■■□□□ 1.05
TRAV38-1A0A0B4J264 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC21.62■■□□□ 1.05
TRAV38-1A0A0B4J264 AP004833.2-201ENST00000532228 1454 ntBASIC21.62■■□□□ 1.05
TRAV38-1A0A0B4J264 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV38-1A0A0B4J264 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV38-1A0A0B4J264 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAV38-1A0A0B4J264 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAV38-1A0A0B4J264 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
TRAV38-1A0A0B4J264 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV38-1A0A0B4J264 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV38-1A0A0B4J264 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV38-1A0A0B4J264 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms