Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 KRT16P6-202ENST00000425692 1426 ntBASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 AC068338.2-201ENST00000563278 1430 ntBASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 AC105020.6-201ENST00000621523 1217 ntBASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 AP000974.1-201ENST00000623909 2387 ntBASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMA1Q9UHB6 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 KRT8P20-201ENST00000423953 1409 ntBASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 Z82202.1-201ENST00000623446 1880 ntBASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
LIMA1Q9UHB6 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 AL020996.1-203ENST00000536896 2307 ntBASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 DUX4L16-201ENST00000555130 1264 ntBASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 MIR6821-201ENST00000617625 74 ntBASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.8■■□□□ 1.08
LIMA1Q9UHB6 RNF165-205ENST00000588679 2904 ntBASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 KRT18P68-201ENST00000392293 1000 ntBASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
LIMA1Q9UHB6 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LIMA1Q9UHB6 AP001271.2-201ENST00000624018 1556 ntBASIC21.78■■□□□ 1.08
LIMA1Q9UHB6 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LIMA1Q9UHB6 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMA1Q9UHB6 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.78■■□□□ 1.08
LIMA1Q9UHB6 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.78■■□□□ 1.08
LIMA1Q9UHB6 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.78■■□□□ 1.08
LIMA1Q9UHB6 AC137761.2-201ENST00000561729 223 ntBASIC21.78■■□□□ 1.08
LIMA1Q9UHB6 AC145350.3-201ENST00000569033 163 ntBASIC21.78■■□□□ 1.08
LIMA1Q9UHB6 AC087623.3-201ENST00000607047 1098 ntBASIC21.78■■□□□ 1.08
LIMA1Q9UHB6 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LIMA1Q9UHB6 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMA1Q9UHB6 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms