Protein–RNA interactions for Protein: Q9H444

CHMP4B, Charged multivesicular body protein 4b, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4BQ9H444 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
CHMP4BQ9H444 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
CHMP4BQ9H444 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.63
CHMP4BQ9H444 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CHMP4BQ9H444 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CHMP4BQ9H444 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CHMP4BQ9H444 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC25.2■■□□□ 1.62
CHMP4BQ9H444 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
CHMP4BQ9H444 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CHMP4BQ9H444 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CHMP4BQ9H444 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC25.2■■□□□ 1.62
CHMP4BQ9H444 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CHMP4BQ9H444 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CHMP4BQ9H444 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CHMP4BQ9H444 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CHMP4BQ9H444 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CHMP4BQ9H444 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
CHMP4BQ9H444 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC25.19■■□□□ 1.62
CHMP4BQ9H444 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CHMP4BQ9H444 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CHMP4BQ9H444 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CHMP4BQ9H444 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC25.19■■□□□ 1.62
CHMP4BQ9H444 SLC29A4P1-201ENST00000398760 971 ntBASIC25.19■■□□□ 1.62
CHMP4BQ9H444 PPP1R14BP3-201ENST00000509033 445 ntBASIC25.19■■□□□ 1.62
CHMP4BQ9H444 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC25.19■■□□□ 1.62
CHMP4BQ9H444 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC25.19■■□□□ 1.62
CHMP4BQ9H444 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
CHMP4BQ9H444 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CHMP4BQ9H444 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
CHMP4BQ9H444 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CHMP4BQ9H444 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CHMP4BQ9H444 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
CHMP4BQ9H444 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CHMP4BQ9H444 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CHMP4BQ9H444 GPX1P1-201ENST00000388829 606 ntBASIC25.18■■□□□ 1.62
CHMP4BQ9H444 MIPEPP3-201ENST00000412105 444 ntBASIC25.18■■□□□ 1.62
CHMP4BQ9H444 NCF1B-203ENST00000435988 1254 ntBASIC25.18■■□□□ 1.62
CHMP4BQ9H444 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC25.18■■□□□ 1.62
CHMP4BQ9H444 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC25.18■■□□□ 1.62
CHMP4BQ9H444 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC25.18■■□□□ 1.62
CHMP4BQ9H444 AC092118.2-201ENST00000613495 667 ntBASIC25.18■■□□□ 1.62
CHMP4BQ9H444 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CHMP4BQ9H444 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
CHMP4BQ9H444 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CHMP4BQ9H444 AC009237.14-201ENST00000609975 1594 ntBASIC25.18■■□□□ 1.62
CHMP4BQ9H444 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 MOK-225ENST00000522867 1883 ntTSL 5 BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC25.17■■□□□ 1.62
CHMP4BQ9H444 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 LBX2-AS1-202ENST00000603175 2083 ntBASIC25.16■■□□□ 1.62
CHMP4BQ9H444 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 AP001271.2-201ENST00000624018 1556 ntBASIC25.16■■□□□ 1.62
CHMP4BQ9H444 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC25.16■■□□□ 1.62
CHMP4BQ9H444 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CHMP4BQ9H444 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CHMP4BQ9H444 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CHMP4BQ9H444 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CHMP4BQ9H444 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CHMP4BQ9H444 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CHMP4BQ9H444 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC25.15■■□□□ 1.62
CHMP4BQ9H444 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CHMP4BQ9H444 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CHMP4BQ9H444 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CHMP4BQ9H444 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CHMP4BQ9H444 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC25.15■■□□□ 1.62
CHMP4BQ9H444 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CHMP4BQ9H444 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CHMP4BQ9H444 BID-204ENST00000399767 2129 ntTSL 2 BASIC25.15■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms