Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NPAS1Q99742 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
NPAS1Q99742 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
NPAS1Q99742 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.2■□□□□ 0.5
NPAS1Q99742 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
NPAS1Q99742 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NPAS1Q99742 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
NPAS1Q99742 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
NPAS1Q99742 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.2■□□□□ 0.5
NPAS1Q99742 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.19■□□□□ 0.5
NPAS1Q99742 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPAS1Q99742 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
NPAS1Q99742 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPAS1Q99742 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.19■□□□□ 0.5
NPAS1Q99742 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.19■□□□□ 0.5
NPAS1Q99742 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
NPAS1Q99742 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
NPAS1Q99742 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.19■□□□□ 0.5
NPAS1Q99742 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.19■□□□□ 0.5
NPAS1Q99742 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.19■□□□□ 0.5
NPAS1Q99742 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPAS1Q99742 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.19■□□□□ 0.5
NPAS1Q99742 MIR4651-201ENST00000582622 73 ntBASIC18.19■□□□□ 0.5
NPAS1Q99742 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.19■□□□□ 0.5
NPAS1Q99742 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
NPAS1Q99742 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
NPAS1Q99742 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPAS1Q99742 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
NPAS1Q99742 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPAS1Q99742 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS1Q99742 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS1Q99742 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
NPAS1Q99742 AC092368.3-202ENST00000574180 1591 ntBASIC18.18■□□□□ 0.5
NPAS1Q99742 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.18■□□□□ 0.5
NPAS1Q99742 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.18■□□□□ 0.5
NPAS1Q99742 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS1Q99742 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.18■□□□□ 0.5
NPAS1Q99742 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
NPAS1Q99742 AC006557.6-201ENST00000623071 864 ntBASIC18.18■□□□□ 0.5
NPAS1Q99742 HLA-B-256ENST00000639848 1089 ntBASIC18.18■□□□□ 0.5
NPAS1Q99742 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.18■□□□□ 0.5
NPAS1Q99742 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS1Q99742 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS1Q99742 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.18■□□□□ 0.5
NPAS1Q99742 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS1Q99742 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS1Q99742 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.17■□□□□ 0.5
NPAS1Q99742 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS1Q99742 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS1Q99742 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
NPAS1Q99742 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS1Q99742 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.17■□□□□ 0.5
NPAS1Q99742 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
NPAS1Q99742 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS1Q99742 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
NPAS1Q99742 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS1Q99742 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS1Q99742 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.17■□□□□ 0.5
NPAS1Q99742 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.17■□□□□ 0.5
NPAS1Q99742 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.17■□□□□ 0.5
NPAS1Q99742 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS1Q99742 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS1Q99742 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.17■□□□□ 0.5
NPAS1Q99742 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.17■□□□□ 0.5
NPAS1Q99742 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.17■□□□□ 0.5
NPAS1Q99742 PNMA6B-201ENST00000538162 1200 ntBASIC18.17■□□□□ 0.5
NPAS1Q99742 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS1Q99742 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.17■□□□□ 0.5
NPAS1Q99742 AC060766.5-201ENST00000590539 871 ntBASIC18.17■□□□□ 0.5
NPAS1Q99742 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.17■□□□□ 0.5
NPAS1Q99742 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.17■□□□□ 0.5
NPAS1Q99742 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS1Q99742 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.17■□□□□ 0.5
NPAS1Q99742 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS1Q99742 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS1Q99742 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
NPAS1Q99742 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS1Q99742 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.17■□□□□ 0.5
NPAS1Q99742 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS1Q99742 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
NPAS1Q99742 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.16■□□□□ 0.5
NPAS1Q99742 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.16■□□□□ 0.5
NPAS1Q99742 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.16■□□□□ 0.5
NPAS1Q99742 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS1Q99742 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.16■□□□□ 0.5
NPAS1Q99742 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS1Q99742 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.16■□□□□ 0.5
NPAS1Q99742 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.16■□□□□ 0.5
NPAS1Q99742 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.16■□□□□ 0.5
NPAS1Q99742 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
NPAS1Q99742 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC18.16■□□□□ 0.5
NPAS1Q99742 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS1Q99742 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.16■□□□□ 0.5
NPAS1Q99742 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
NPAS1Q99742 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
NPAS1Q99742 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
NPAS1Q99742 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms