Protein–RNA interactions for Protein: Q6VVB1

NHLRC1, E3 ubiquitin-protein ligase NHLRC1, humanhuman

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC1Q6VVB1 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
NHLRC1Q6VVB1 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC17.94■□□□□ 0.46
NHLRC1Q6VVB1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 MIPEPP3-201ENST00000412105 444 ntBASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 TSPY6P-201ENST00000448518 926 ntBASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 NXN-202ENST00000537628 1340 ntTSL 3 BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
NHLRC1Q6VVB1 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 TCF3P1-201ENST00000423021 1937 ntBASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 BX119927.1-201ENST00000636596 1552 ntBASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 BX276092.2-201ENST00000417668 665 ntBASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 AC006970.2-201ENST00000450065 779 ntBASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
NHLRC1Q6VVB1 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
NHLRC1Q6VVB1 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 AC112907.3-201ENST00000577781 2400 ntBASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 GPX1P1-201ENST00000388829 606 ntBASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
NHLRC1Q6VVB1 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.89■□□□□ 0.46
NHLRC1Q6VVB1 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.89■□□□□ 0.46
NHLRC1Q6VVB1 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms