Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS1Q01581 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS1Q01581 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGCS1Q01581 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HMGCS1Q01581 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
HMGCS1Q01581 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGCS1Q01581 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
HMGCS1Q01581 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGCS1Q01581 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGCS1Q01581 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGCS1Q01581 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGCS1Q01581 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGCS1Q01581 KRT18P68-201ENST00000392293 1000 ntBASIC19.24■□□□□ 0.67
HMGCS1Q01581 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGCS1Q01581 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.24■□□□□ 0.67
HMGCS1Q01581 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGCS1Q01581 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGCS1Q01581 AC105020.6-201ENST00000621523 1217 ntBASIC19.24■□□□□ 0.67
HMGCS1Q01581 TMEM179-206ENST00000616017 1645 ntBASIC19.24■□□□□ 0.67
HMGCS1Q01581 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HMGCS1Q01581 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
HMGCS1Q01581 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HMGCS1Q01581 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.24■□□□□ 0.67
HMGCS1Q01581 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HMGCS1Q01581 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGCS1Q01581 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGCS1Q01581 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.23■□□□□ 0.67
HMGCS1Q01581 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
HMGCS1Q01581 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
HMGCS1Q01581 AC069236.1-201ENST00000604339 616 ntBASIC19.23■□□□□ 0.67
HMGCS1Q01581 AL137784.2-201ENST00000607332 1000 ntBASIC19.23■□□□□ 0.67
HMGCS1Q01581 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.23■□□□□ 0.67
HMGCS1Q01581 AC231657.2-201ENST00000624556 255 ntBASIC19.23■□□□□ 0.67
HMGCS1Q01581 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.23■□□□□ 0.67
HMGCS1Q01581 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.23■□□□□ 0.67
HMGCS1Q01581 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGCS1Q01581 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGCS1Q01581 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HMGCS1Q01581 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGCS1Q01581 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGCS1Q01581 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGCS1Q01581 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGCS1Q01581 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.22■□□□□ 0.67
HMGCS1Q01581 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGCS1Q01581 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGCS1Q01581 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
HMGCS1Q01581 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
HMGCS1Q01581 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGCS1Q01581 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.22■□□□□ 0.67
HMGCS1Q01581 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.22■□□□□ 0.67
HMGCS1Q01581 AC007322.1-201ENST00000426983 750 ntBASIC19.22■□□□□ 0.67
HMGCS1Q01581 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.22■□□□□ 0.67
HMGCS1Q01581 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGCS1Q01581 CYP2T3P-201ENST00000601990 817 ntBASIC19.22■□□□□ 0.67
HMGCS1Q01581 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.22■□□□□ 0.67
HMGCS1Q01581 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.22■□□□□ 0.67
HMGCS1Q01581 AC008694.1-202ENST00000636953 945 ntBASIC19.22■□□□□ 0.67
HMGCS1Q01581 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
HMGCS1Q01581 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.22■□□□□ 0.67
HMGCS1Q01581 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.22■□□□□ 0.67
HMGCS1Q01581 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
HMGCS1Q01581 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGCS1Q01581 AC116562.4-201ENST00000641316 2276 ntBASIC19.22■□□□□ 0.67
HMGCS1Q01581 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGCS1Q01581 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.22■□□□□ 0.67
HMGCS1Q01581 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGCS1Q01581 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGCS1Q01581 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGCS1Q01581 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.21■□□□□ 0.67
HMGCS1Q01581 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGCS1Q01581 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGCS1Q01581 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGCS1Q01581 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.21■□□□□ 0.67
HMGCS1Q01581 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.21■□□□□ 0.67
HMGCS1Q01581 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGCS1Q01581 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGCS1Q01581 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGCS1Q01581 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGCS1Q01581 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGCS1Q01581 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.21■□□□□ 0.67
HMGCS1Q01581 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS1Q01581 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS1Q01581 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGCS1Q01581 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms