Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.03■□□□□ 0.96
CHRNA3P32297 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CHRNA3P32297 MKRN4P-201ENST00000444706 1521 ntBASIC21.03■□□□□ 0.96
CHRNA3P32297 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHRNA3P32297 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHRNA3P32297 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
CHRNA3P32297 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.03■□□□□ 0.96
CHRNA3P32297 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHRNA3P32297 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CHRNA3P32297 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHRNA3P32297 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHRNA3P32297 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.02■□□□□ 0.96
CHRNA3P32297 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.02■□□□□ 0.96
CHRNA3P32297 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHRNA3P32297 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CHRNA3P32297 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHRNA3P32297 RARRES2P4-201ENST00000514074 484 ntBASIC21.02■□□□□ 0.96
CHRNA3P32297 KRT8P36-201ENST00000489121 1440 ntBASIC21.02■□□□□ 0.96
CHRNA3P32297 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CHRNA3P32297 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
CHRNA3P32297 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
CHRNA3P32297 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CHRNA3P32297 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHRNA3P32297 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CHRNA3P32297 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
CHRNA3P32297 AL158211.5-201ENST00000623583 2518 ntBASIC21.01■□□□□ 0.95
CHRNA3P32297 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHRNA3P32297 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHRNA3P32297 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.01■□□□□ 0.95
CHRNA3P32297 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.01■□□□□ 0.95
CHRNA3P32297 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.01■□□□□ 0.95
CHRNA3P32297 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.01■□□□□ 0.95
CHRNA3P32297 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.01■□□□□ 0.95
CHRNA3P32297 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHRNA3P32297 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHRNA3P32297 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHRNA3P32297 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.01■□□□□ 0.95
CHRNA3P32297 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHRNA3P32297 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
CHRNA3P32297 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHRNA3P32297 H19-201ENST00000411754 1788 ntTSL 5 BASIC21■□□□□ 0.95
CHRNA3P32297 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHRNA3P32297 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21■□□□□ 0.95
CHRNA3P32297 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21■□□□□ 0.95
CHRNA3P32297 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CHRNA3P32297 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21■□□□□ 0.95
CHRNA3P32297 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21■□□□□ 0.95
CHRNA3P32297 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHRNA3P32297 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHRNA3P32297 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21■□□□□ 0.95
CHRNA3P32297 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21■□□□□ 0.95
CHRNA3P32297 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21■□□□□ 0.95
CHRNA3P32297 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21■□□□□ 0.95
CHRNA3P32297 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHRNA3P32297 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CHRNA3P32297 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHRNA3P32297 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CHRNA3P32297 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CHRNA3P32297 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21■□□□□ 0.95
CHRNA3P32297 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHRNA3P32297 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CHRNA3P32297 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21■□□□□ 0.95
CHRNA3P32297 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CHRNA3P32297 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21■□□□□ 0.95
CHRNA3P32297 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21■□□□□ 0.95
CHRNA3P32297 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHRNA3P32297 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHRNA3P32297 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.99■□□□□ 0.95
CHRNA3P32297 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.99■□□□□ 0.95
CHRNA3P32297 DPP3P2-201ENST00000416030 1696 ntBASIC20.99■□□□□ 0.95
CHRNA3P32297 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHRNA3P32297 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CHRNA3P32297 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CHRNA3P32297 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.99■□□□□ 0.95
CHRNA3P32297 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CHRNA3P32297 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.99■□□□□ 0.95
CHRNA3P32297 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.99■□□□□ 0.95
CHRNA3P32297 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CHRNA3P32297 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.99■□□□□ 0.95
CHRNA3P32297 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHRNA3P32297 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.99■□□□□ 0.95
CHRNA3P32297 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHRNA3P32297 TMEM179-206ENST00000616017 1645 ntBASIC20.99■□□□□ 0.95
CHRNA3P32297 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CHRNA3P32297 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHRNA3P32297 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHRNA3P32297 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CHRNA3P32297 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHRNA3P32297 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHRNA3P32297 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
CHRNA3P32297 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHRNA3P32297 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CHRNA3P32297 AC087289.5-201ENST00000586076 3175 ntBASIC20.98■□□□□ 0.95
CHRNA3P32297 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHRNA3P32297 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CHRNA3P32297 BX323043.1-201ENST00000641006 1765 ntBASIC20.98■□□□□ 0.95
CHRNA3P32297 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.98■□□□□ 0.95
CHRNA3P32297 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHRNA3P32297 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHRNA3P32297 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms