Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXA9P31269 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXA9P31269 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
HOXA9P31269 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.9■□□□□ 0.94
HOXA9P31269 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXA9P31269 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXA9P31269 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
HOXA9P31269 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HOXA9P31269 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
HOXA9P31269 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.89■□□□□ 0.93
HOXA9P31269 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
HOXA9P31269 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXA9P31269 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXA9P31269 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXA9P31269 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXA9P31269 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.89■□□□□ 0.93
HOXA9P31269 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.89■□□□□ 0.93
HOXA9P31269 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.89■□□□□ 0.93
HOXA9P31269 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.89■□□□□ 0.93
HOXA9P31269 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXA9P31269 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.89■□□□□ 0.93
HOXA9P31269 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXA9P31269 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXA9P31269 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXA9P31269 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXA9P31269 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.89■□□□□ 0.93
HOXA9P31269 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXA9P31269 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXA9P31269 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXA9P31269 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.88■□□□□ 0.93
HOXA9P31269 KRT16P1-201ENST00000399124 1418 ntBASIC20.88■□□□□ 0.93
HOXA9P31269 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HOXA9P31269 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.88■□□□□ 0.93
HOXA9P31269 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.88■□□□□ 0.93
HOXA9P31269 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
HOXA9P31269 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXA9P31269 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXA9P31269 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.88■□□□□ 0.93
HOXA9P31269 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HOXA9P31269 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.88■□□□□ 0.93
HOXA9P31269 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
HOXA9P31269 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.88■□□□□ 0.93
HOXA9P31269 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.87■□□□□ 0.93
HOXA9P31269 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXA9P31269 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HOXA9P31269 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXA9P31269 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.87■□□□□ 0.93
HOXA9P31269 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXA9P31269 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXA9P31269 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.87■□□□□ 0.93
HOXA9P31269 TMPOP1-202ENST00000424642 1267 ntBASIC20.87■□□□□ 0.93
HOXA9P31269 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.87■□□□□ 0.93
HOXA9P31269 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.87■□□□□ 0.93
HOXA9P31269 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.87■□□□□ 0.93
HOXA9P31269 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.87■□□□□ 0.93
HOXA9P31269 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXA9P31269 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
HOXA9P31269 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.87■□□□□ 0.93
HOXA9P31269 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXA9P31269 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXA9P31269 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HOXA9P31269 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.86■□□□□ 0.93
HOXA9P31269 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
HOXA9P31269 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.86■□□□□ 0.93
HOXA9P31269 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXA9P31269 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.86■□□□□ 0.93
HOXA9P31269 AP000525.1-201ENST00000608286 694 ntBASIC20.86■□□□□ 0.93
HOXA9P31269 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.86■□□□□ 0.93
HOXA9P31269 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.86■□□□□ 0.93
HOXA9P31269 MIR6786-201ENST00000616843 113 ntBASIC20.86■□□□□ 0.93
HOXA9P31269 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.86■□□□□ 0.93
HOXA9P31269 CR392000.1-201ENST00000624770 1228 ntBASIC20.86■□□□□ 0.93
HOXA9P31269 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
HOXA9P31269 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
HOXA9P31269 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXA9P31269 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXA9P31269 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.86■□□□□ 0.93
HOXA9P31269 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXA9P31269 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.86■□□□□ 0.93
HOXA9P31269 AL121603.2-201ENST00000557373 2117 ntBASIC20.86■□□□□ 0.93
HOXA9P31269 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HOXA9P31269 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.85■□□□□ 0.93
HOXA9P31269 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXA9P31269 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HOXA9P31269 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
HOXA9P31269 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
HOXA9P31269 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXA9P31269 FITM1-202ENST00000559294 800 ntBASIC20.85■□□□□ 0.93
HOXA9P31269 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXA9P31269 AC092865.7-201ENST00000641832 219 ntBASIC20.85■□□□□ 0.93
HOXA9P31269 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
HOXA9P31269 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.85■□□□□ 0.93
HOXA9P31269 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXA9P31269 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.85■□□□□ 0.93
HOXA9P31269 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXA9P31269 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXA9P31269 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HOXA9P31269 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
HOXA9P31269 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
HOXA9P31269 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms