Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB3O15347 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
HMGB3O15347 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB3O15347 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB3O15347 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB3O15347 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB3O15347 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
HMGB3O15347 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC16.08■□□□□ 0.16
HMGB3O15347 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC16.08■□□□□ 0.16
HMGB3O15347 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
HMGB3O15347 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB3O15347 TNXA-203ENST00000507684 2038 ntBASIC16.07■□□□□ 0.16
HMGB3O15347 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB3O15347 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGB3O15347 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
HMGB3O15347 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGB3O15347 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB3O15347 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGB3O15347 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGB3O15347 MIR6724-1-201ENST00000616420 92 ntBASIC16.07■□□□□ 0.16
HMGB3O15347 MIR6724-2-201ENST00000616483 92 ntBASIC16.07■□□□□ 0.16
HMGB3O15347 MIR6724-4-201ENST00000617390 92 ntBASIC16.07■□□□□ 0.16
HMGB3O15347 MIR6724-3-201ENST00000622482 92 ntBASIC16.07■□□□□ 0.16
HMGB3O15347 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB3O15347 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
HMGB3O15347 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB3O15347 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB3O15347 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB3O15347 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB3O15347 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGB3O15347 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB3O15347 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGB3O15347 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGB3O15347 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGB3O15347 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGB3O15347 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB3O15347 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
HMGB3O15347 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB3O15347 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB3O15347 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB3O15347 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB3O15347 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB3O15347 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB3O15347 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB3O15347 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB3O15347 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB3O15347 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB3O15347 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB3O15347 AC068587.6-202ENST00000641839 5619 ntBASIC16.06■□□□□ 0.16
HMGB3O15347 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB3O15347 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB3O15347 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB3O15347 AC092720.2-201ENST00000602388 1665 ntBASIC16.06■□□□□ 0.16
HMGB3O15347 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB3O15347 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB3O15347 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGB3O15347 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB3O15347 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
HMGB3O15347 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
HMGB3O15347 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB3O15347 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGB3O15347 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB3O15347 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HMGB3O15347 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB3O15347 LBX2-AS1-202ENST00000603175 2083 ntBASIC16.06■□□□□ 0.16
HMGB3O15347 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGB3O15347 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGB3O15347 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HMGB3O15347 AC007326.2-201ENST00000624224 7579 ntBASIC16.05■□□□□ 0.16
HMGB3O15347 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.05■□□□□ 0.16
HMGB3O15347 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HMGB3O15347 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGB3O15347 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGB3O15347 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HMGB3O15347 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 HTR7P1-202ENST00000624664 4411 ntBASIC16.05■□□□□ 0.16
HMGB3O15347 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGB3O15347 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB3O15347 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB3O15347 PXK-203ENST00000383715 1756 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGB3O15347 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGB3O15347 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms