Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-2A0A0B4J238 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRAV1-2A0A0B4J238 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.38■□□□□ 0.37
TRAV1-2A0A0B4J238 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
TRAV1-2A0A0B4J238 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 NEFHP1-201ENST00000412845 2629 ntBASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRAV1-2A0A0B4J238 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 AL354811.1-201ENST00000610286 706 ntBASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
TRAV1-2A0A0B4J238 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 NT5C3AP1-201ENST00000394500 1012 ntBASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 SLC7A5P2-201ENST00000553010 536 ntBASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-2A0A0B4J238 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-2A0A0B4J238 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms