Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 GXYLT1P4-201ENST00000613576 1192 ntBASIC12.53□□□□□ -0.4
HSPG2P98160 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
HSPG2P98160 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HSPG2P98160 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC12.53□□□□□ -0.4
HSPG2P98160 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HSPG2P98160 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC12.53□□□□□ -0.4
HSPG2P98160 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC12.53□□□□□ -0.4
HSPG2P98160 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HSPG2P98160 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HSPG2P98160 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HSPG2P98160 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC12.53□□□□□ -0.4
HSPG2P98160 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HSPG2P98160 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC12.53□□□□□ -0.4
HSPG2P98160 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC12.53□□□□□ -0.4
HSPG2P98160 MIR3180-1-201ENST00000580374 94 ntBASIC12.53□□□□□ -0.4
HSPG2P98160 MIR3180-3-201ENST00000584616 94 ntBASIC12.53□□□□□ -0.4
HSPG2P98160 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HSPG2P98160 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
HSPG2P98160 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC12.52□□□□□ -0.4
HSPG2P98160 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HSPG2P98160 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC12.52□□□□□ -0.4
HSPG2P98160 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC12.52□□□□□ -0.4
HSPG2P98160 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC12.52□□□□□ -0.4
HSPG2P98160 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
HSPG2P98160 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC12.52□□□□□ -0.4
HSPG2P98160 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HSPG2P98160 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
HSPG2P98160 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
HSPG2P98160 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HSPG2P98160 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HSPG2P98160 AC004980.1-204ENST00000429707 299 ntBASIC12.52□□□□□ -0.41
HSPG2P98160 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC12.52□□□□□ -0.41
HSPG2P98160 AC011506.1-201ENST00000474329 610 ntBASIC12.52□□□□□ -0.41
HSPG2P98160 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC12.52□□□□□ -0.41
HSPG2P98160 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC12.52□□□□□ -0.41
HSPG2P98160 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC12.52□□□□□ -0.41
HSPG2P98160 AC092119.3-201ENST00000612618 583 ntBASIC12.52□□□□□ -0.41
HSPG2P98160 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
HSPG2P98160 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HSPG2P98160 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HSPG2P98160 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC12.52□□□□□ -0.41
HSPG2P98160 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC12.52□□□□□ -0.41
HSPG2P98160 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HSPG2P98160 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HSPG2P98160 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
HSPG2P98160 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
HSPG2P98160 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HSPG2P98160 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HSPG2P98160 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HSPG2P98160 AC007663.1-201ENST00000438948 1240 ntBASIC12.51□□□□□ -0.41
HSPG2P98160 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC12.51□□□□□ -0.41
HSPG2P98160 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC12.51□□□□□ -0.41
HSPG2P98160 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC12.51□□□□□ -0.41
HSPG2P98160 AL023803.3-201ENST00000615559 522 ntBASIC12.51□□□□□ -0.41
HSPG2P98160 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC12.51□□□□□ -0.41
HSPG2P98160 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC12.51□□□□□ -0.41
HSPG2P98160 AC096733.2-201ENST00000609937 1394 ntBASIC12.51□□□□□ -0.41
HSPG2P98160 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HSPG2P98160 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HSPG2P98160 PNN-205ENST00000556530 601 ntTSL 2 BASIC12.51□□□□□ -0.41
HSPG2P98160 ETFA-216ENST00000560726 942 ntTSL 3 BASIC12.51□□□□□ -0.41
HSPG2P98160 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HSPG2P98160 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
HSPG2P98160 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
HSPG2P98160 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC12.51□□□□□ -0.41
HSPG2P98160 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC12.51□□□□□ -0.41
HSPG2P98160 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HSPG2P98160 AC092338.2-201ENST00000568827 1415 ntBASIC12.51□□□□□ -0.41
HSPG2P98160 CKBP1-201ENST00000565489 1086 ntBASIC12.51□□□□□ -0.41
HSPG2P98160 AL441883.1-201ENST00000566170 1045 ntBASIC12.51□□□□□ -0.41
HSPG2P98160 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HSPG2P98160 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC12.51□□□□□ -0.41
HSPG2P98160 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HSPG2P98160 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
HSPG2P98160 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HSPG2P98160 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
HSPG2P98160 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC12.51□□□□□ -0.41
HSPG2P98160 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC12.51□□□□□ -0.41
HSPG2P98160 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC12.51□□□□□ -0.41
HSPG2P98160 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HSPG2P98160 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HSPG2P98160 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
HSPG2P98160 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HSPG2P98160 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
HSPG2P98160 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HSPG2P98160 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC12.5□□□□□ -0.41
HSPG2P98160 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HSPG2P98160 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HSPG2P98160 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC12.5□□□□□ -0.41
HSPG2P98160 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC12.5□□□□□ -0.41
HSPG2P98160 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC12.5□□□□□ -0.41
HSPG2P98160 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC12.5□□□□□ -0.41
HSPG2P98160 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HSPG2P98160 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HSPG2P98160 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
HSPG2P98160 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC12.5□□□□□ -0.41
HSPG2P98160 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC12.5□□□□□ -0.41
HSPG2P98160 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC12.5□□□□□ -0.41
HSPG2P98160 AP000692.2-201ENST00000608391 879 ntBASIC12.5□□□□□ -0.41
HSPG2P98160 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms