Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL9A1P20849 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL9A1P20849 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL9A1P20849 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL9A1P20849 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL9A1P20849 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL9A1P20849 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL9A1P20849 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.72■□□□□ 0.91
COL9A1P20849 TSPY21P-201ENST00000433481 731 ntBASIC20.72■□□□□ 0.91
COL9A1P20849 HMGN1P19-201ENST00000436976 333 ntBASIC20.72■□□□□ 0.91
COL9A1P20849 TSPY23P-201ENST00000440136 739 ntBASIC20.72■□□□□ 0.91
COL9A1P20849 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
COL9A1P20849 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL9A1P20849 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.72■□□□□ 0.91
COL9A1P20849 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.72■□□□□ 0.91
COL9A1P20849 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.72■□□□□ 0.91
COL9A1P20849 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.72■□□□□ 0.91
COL9A1P20849 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
COL9A1P20849 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
COL9A1P20849 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL9A1P20849 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.72■□□□□ 0.91
COL9A1P20849 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL9A1P20849 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.71■□□□□ 0.91
COL9A1P20849 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL9A1P20849 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
COL9A1P20849 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
COL9A1P20849 AC233723.2-201ENST00000623798 2106 ntBASIC20.71■□□□□ 0.91
COL9A1P20849 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.71■□□□□ 0.91
COL9A1P20849 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL9A1P20849 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL9A1P20849 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.71■□□□□ 0.91
COL9A1P20849 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL9A1P20849 KRT18P13-201ENST00000400056 1290 ntBASIC20.71■□□□□ 0.91
COL9A1P20849 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.71■□□□□ 0.91
COL9A1P20849 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.71■□□□□ 0.91
COL9A1P20849 AC139887.4-201ENST00000607877 719 ntBASIC20.71■□□□□ 0.91
COL9A1P20849 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL9A1P20849 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL9A1P20849 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL9A1P20849 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL9A1P20849 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.7■□□□□ 0.91
COL9A1P20849 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.7■□□□□ 0.9
COL9A1P20849 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL9A1P20849 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL9A1P20849 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
COL9A1P20849 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
COL9A1P20849 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
COL9A1P20849 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL9A1P20849 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL9A1P20849 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL9A1P20849 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL9A1P20849 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.7■□□□□ 0.9
COL9A1P20849 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL9A1P20849 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.7■□□□□ 0.9
COL9A1P20849 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.7■□□□□ 0.9
COL9A1P20849 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.7■□□□□ 0.9
COL9A1P20849 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL9A1P20849 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL9A1P20849 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL9A1P20849 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL9A1P20849 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.7■□□□□ 0.9
COL9A1P20849 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.7■□□□□ 0.9
COL9A1P20849 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL9A1P20849 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.7■□□□□ 0.9
COL9A1P20849 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL9A1P20849 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL9A1P20849 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.69■□□□□ 0.9
COL9A1P20849 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL9A1P20849 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL9A1P20849 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
COL9A1P20849 CFL1-212ENST00000531413 636 ntTSL 3 BASIC20.69■□□□□ 0.9
COL9A1P20849 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
COL9A1P20849 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.69■□□□□ 0.9
COL9A1P20849 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL9A1P20849 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.69■□□□□ 0.9
COL9A1P20849 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL9A1P20849 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
COL9A1P20849 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL9A1P20849 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL9A1P20849 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL9A1P20849 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.69■□□□□ 0.9
COL9A1P20849 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL9A1P20849 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.69■□□□□ 0.9
COL9A1P20849 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
COL9A1P20849 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL9A1P20849 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.69■□□□□ 0.9
COL9A1P20849 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL9A1P20849 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
COL9A1P20849 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.68■□□□□ 0.9
COL9A1P20849 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL9A1P20849 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL9A1P20849 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL9A1P20849 TSPY5P-201ENST00000426936 936 ntBASIC20.68■□□□□ 0.9
COL9A1P20849 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.68■□□□□ 0.9
COL9A1P20849 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.68■□□□□ 0.9
COL9A1P20849 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.68■□□□□ 0.9
COL9A1P20849 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL9A1P20849 C2orf69P3-201ENST00000565542 1120 ntBASIC20.68■□□□□ 0.9
COL9A1P20849 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
COL9A1P20849 AC004264.1-201ENST00000608354 794 ntBASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms