Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 DUX4L3-201ENST00000630187 1275 ntBASIC17.8■□□□□ 0.44
LIMS4P0CW20 DUX4L7-201ENST00000630678 1275 ntBASIC17.8■□□□□ 0.44
LIMS4P0CW20 DUX4L5-201ENST00000630834 1275 ntBASIC17.8■□□□□ 0.44
LIMS4P0CW20 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS4P0CW20 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
LIMS4P0CW20 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS4P0CW20 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
LIMS4P0CW20 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.8■□□□□ 0.44
LIMS4P0CW20 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS4P0CW20 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS4P0CW20 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS4P0CW20 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
LIMS4P0CW20 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS4P0CW20 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LIMS4P0CW20 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIMS4P0CW20 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LIMS4P0CW20 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 AC243732.1-201ENST00000612648 864 ntBASIC17.79■□□□□ 0.44
LIMS4P0CW20 AL136967.2-201ENST00000623968 743 ntBASIC17.79■□□□□ 0.44
LIMS4P0CW20 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMS4P0CW20 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 AC009237.14-201ENST00000609975 1594 ntBASIC17.79■□□□□ 0.44
LIMS4P0CW20 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LIMS4P0CW20 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMS4P0CW20 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.78■□□□□ 0.44
LIMS4P0CW20 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMS4P0CW20 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMS4P0CW20 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMS4P0CW20 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMS4P0CW20 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMS4P0CW20 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMS4P0CW20 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMS4P0CW20 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
LIMS4P0CW20 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMS4P0CW20 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMS4P0CW20 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMS4P0CW20 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMS4P0CW20 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
LIMS4P0CW20 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMS4P0CW20 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMS4P0CW20 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.78■□□□□ 0.44
LIMS4P0CW20 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC17.78■□□□□ 0.44
LIMS4P0CW20 MIR6084-201ENST00000622012 110 ntBASIC17.78■□□□□ 0.44
LIMS4P0CW20 RBM17P2-201ENST00000616397 1405 ntBASIC17.78■□□□□ 0.44
LIMS4P0CW20 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMS4P0CW20 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMS4P0CW20 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMS4P0CW20 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMS4P0CW20 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIMS4P0CW20 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.77■□□□□ 0.44
LIMS4P0CW20 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
LIMS4P0CW20 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMS4P0CW20 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMS4P0CW20 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMS4P0CW20 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMS4P0CW20 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMS4P0CW20 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIMS4P0CW20 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMS4P0CW20 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMS4P0CW20 AC104187.1-201ENST00000607510 612 ntBASIC17.77■□□□□ 0.44
LIMS4P0CW20 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMS4P0CW20 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIMS4P0CW20 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.77■□□□□ 0.43
LIMS4P0CW20 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIMS4P0CW20 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
LIMS4P0CW20 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.77■□□□□ 0.43
LIMS4P0CW20 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIMS4P0CW20 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.77■□□□□ 0.43
LIMS4P0CW20 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMS4P0CW20 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIMS4P0CW20 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms