Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.83■□□□□ 0.92
CCDC188H7C350 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.83■□□□□ 0.92
CCDC188H7C350 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC188H7C350 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC188H7C350 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC188H7C350 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC188H7C350 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC188H7C350 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC188H7C350 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC188H7C350 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CCDC188H7C350 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC188H7C350 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC188H7C350 CDV3P1-201ENST00000471403 739 ntBASIC20.82■□□□□ 0.92
CCDC188H7C350 SUDS3P1-201ENST00000505831 966 ntBASIC20.82■□□□□ 0.92
CCDC188H7C350 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC188H7C350 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC188H7C350 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
CCDC188H7C350 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC188H7C350 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC188H7C350 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC188H7C350 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC188H7C350 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CCDC188H7C350 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.81■□□□□ 0.92
CCDC188H7C350 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC188H7C350 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC188H7C350 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC188H7C350 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CCDC188H7C350 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC188H7C350 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC188H7C350 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC188H7C350 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC188H7C350 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.81■□□□□ 0.92
CCDC188H7C350 AC027612.3-201ENST00000413684 1047 ntBASIC20.81■□□□□ 0.92
CCDC188H7C350 AC097381.1-201ENST00000429019 1296 ntBASIC20.81■□□□□ 0.92
CCDC188H7C350 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC188H7C350 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC188H7C350 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC188H7C350 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC188H7C350 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.81■□□□□ 0.92
CCDC188H7C350 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC188H7C350 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC188H7C350 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC188H7C350 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC188H7C350 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CCDC188H7C350 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CCDC188H7C350 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC188H7C350 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC188H7C350 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC188H7C350 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC188H7C350 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CCDC188H7C350 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC188H7C350 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
CCDC188H7C350 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC188H7C350 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC188H7C350 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC188H7C350 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC188H7C350 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC188H7C350 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC188H7C350 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.79■□□□□ 0.92
CCDC188H7C350 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC188H7C350 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC188H7C350 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC188H7C350 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC188H7C350 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CCDC188H7C350 AL356652.1-201ENST00000615962 565 ntBASIC20.79■□□□□ 0.92
CCDC188H7C350 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC188H7C350 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC188H7C350 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC188H7C350 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC188H7C350 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC188H7C350 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC188H7C350 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC188H7C350 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC188H7C350 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC188H7C350 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC188H7C350 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC188H7C350 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC188H7C350 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC188H7C350 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC188H7C350 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC188H7C350 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC188H7C350 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CCDC188H7C350 LINC02228-203ENST00000641970 1355 ntBASIC20.78■□□□□ 0.92
CCDC188H7C350 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.78■□□□□ 0.92
CCDC188H7C350 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC188H7C350 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
CCDC188H7C350 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC188H7C350 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC188H7C350 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CCDC188H7C350 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC188H7C350 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC188H7C350 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC188H7C350 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC188H7C350 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CCDC188H7C350 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC188H7C350 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC188H7C350 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC188H7C350 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC188H7C350 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC188H7C350 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms