Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VPS50Q96JG6 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
VPS50Q96JG6 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.57■□□□□ 0.72
VPS50Q96JG6 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
VPS50Q96JG6 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS50Q96JG6 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.57■□□□□ 0.72
VPS50Q96JG6 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS50Q96JG6 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VPS50Q96JG6 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.57■□□□□ 0.72
VPS50Q96JG6 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.56■□□□□ 0.72
VPS50Q96JG6 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS50Q96JG6 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS50Q96JG6 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS50Q96JG6 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS50Q96JG6 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
VPS50Q96JG6 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS50Q96JG6 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.56■□□□□ 0.72
VPS50Q96JG6 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.56■□□□□ 0.72
VPS50Q96JG6 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.56■□□□□ 0.72
VPS50Q96JG6 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.56■□□□□ 0.72
VPS50Q96JG6 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VPS50Q96JG6 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VPS50Q96JG6 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
VPS50Q96JG6 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.55■□□□□ 0.72
VPS50Q96JG6 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS50Q96JG6 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS50Q96JG6 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
VPS50Q96JG6 AC027702.1-201ENST00000563810 1770 ntBASIC19.55■□□□□ 0.72
VPS50Q96JG6 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS50Q96JG6 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS50Q96JG6 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
VPS50Q96JG6 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS50Q96JG6 AC069152.1-201ENST00000438030 544 ntBASIC19.55■□□□□ 0.72
VPS50Q96JG6 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS50Q96JG6 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS50Q96JG6 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.55■□□□□ 0.72
VPS50Q96JG6 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
VPS50Q96JG6 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS50Q96JG6 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS50Q96JG6 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VPS50Q96JG6 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VPS50Q96JG6 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS50Q96JG6 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
VPS50Q96JG6 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS50Q96JG6 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS50Q96JG6 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS50Q96JG6 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS50Q96JG6 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
VPS50Q96JG6 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS50Q96JG6 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS50Q96JG6 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
VPS50Q96JG6 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS50Q96JG6 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS50Q96JG6 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS50Q96JG6 GUSBP6-202ENST00000438529 1198 ntBASIC19.54■□□□□ 0.72
VPS50Q96JG6 CDV3P1-201ENST00000471403 739 ntBASIC19.54■□□□□ 0.72
VPS50Q96JG6 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
VPS50Q96JG6 CD99P1-205ENST00000527459 561 ntBASIC19.54■□□□□ 0.72
VPS50Q96JG6 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.54■□□□□ 0.72
VPS50Q96JG6 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.54■□□□□ 0.72
VPS50Q96JG6 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS50Q96JG6 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS50Q96JG6 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS50Q96JG6 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VPS50Q96JG6 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VPS50Q96JG6 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
VPS50Q96JG6 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
VPS50Q96JG6 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS50Q96JG6 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
VPS50Q96JG6 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.53■□□□□ 0.72
VPS50Q96JG6 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS50Q96JG6 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS50Q96JG6 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS50Q96JG6 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS50Q96JG6 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.53■□□□□ 0.72
VPS50Q96JG6 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.53■□□□□ 0.72
VPS50Q96JG6 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS50Q96JG6 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VPS50Q96JG6 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VPS50Q96JG6 AC061975.6-201ENST00000579045 1553 ntBASIC19.53■□□□□ 0.72
VPS50Q96JG6 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.52■□□□□ 0.72
VPS50Q96JG6 AC087289.5-201ENST00000586076 3175 ntBASIC19.52■□□□□ 0.72
VPS50Q96JG6 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS50Q96JG6 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS50Q96JG6 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS50Q96JG6 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
VPS50Q96JG6 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS50Q96JG6 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS50Q96JG6 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.52■□□□□ 0.72
VPS50Q96JG6 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.52■□□□□ 0.72
VPS50Q96JG6 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.52■□□□□ 0.72
VPS50Q96JG6 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS50Q96JG6 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS50Q96JG6 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS50Q96JG6 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS50Q96JG6 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS50Q96JG6 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
VPS50Q96JG6 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS50Q96JG6 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS50Q96JG6 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms