Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SNRNP40Q96DI7 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SNRNP40Q96DI7 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SNRNP40Q96DI7 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SNRNP40Q96DI7 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
SNRNP40Q96DI7 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SNRNP40Q96DI7 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.12■□□□□ 0.49
SNRNP40Q96DI7 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
SNRNP40Q96DI7 AC027702.1-201ENST00000563810 1770 ntBASIC18.12■□□□□ 0.49
SNRNP40Q96DI7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.12■□□□□ 0.49
SNRNP40Q96DI7 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SNRNP40Q96DI7 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 AL390955.1-201ENST00000428694 934 ntBASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 CR392000.1-201ENST00000624770 1228 ntBASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 KRT18P22-201ENST00000402024 1347 ntBASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 CYP2D8P-201ENST00000433633 1490 ntBASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 AC233723.2-201ENST00000623798 2106 ntBASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.11■□□□□ 0.49
SNRNP40Q96DI7 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 AL137013.1-201ENST00000432946 1228 ntBASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SNRNP40Q96DI7 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 TERF1P1-201ENST00000311003 1181 ntBASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 AC116562.2-201ENST00000507042 360 ntBASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 FITM1-202ENST00000559294 800 ntBASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 AC010947.1-201ENST00000623454 693 ntBASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 MIR2861-201ENST00000636310 90 ntBASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.09■□□□□ 0.49
SNRNP40Q96DI7 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
SNRNP40Q96DI7 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
SNRNP40Q96DI7 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SNRNP40Q96DI7 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.08■□□□□ 0.49
SNRNP40Q96DI7 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SNRNP40Q96DI7 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
SNRNP40Q96DI7 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.08■□□□□ 0.49
SNRNP40Q96DI7 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SNRNP40Q96DI7 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SNRNP40Q96DI7 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
SNRNP40Q96DI7 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SNRNP40Q96DI7 KSR1P1-201ENST00000446298 240 ntBASIC18.08■□□□□ 0.48
SNRNP40Q96DI7 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SNRNP40Q96DI7 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.08■□□□□ 0.48
SNRNP40Q96DI7 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SNRNP40Q96DI7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
SNRNP40Q96DI7 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SNRNP40Q96DI7 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SNRNP40Q96DI7 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.08■□□□□ 0.48
SNRNP40Q96DI7 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SNRNP40Q96DI7 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SNRNP40Q96DI7 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.07■□□□□ 0.48
SNRNP40Q96DI7 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.07■□□□□ 0.48
SNRNP40Q96DI7 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SNRNP40Q96DI7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.07■□□□□ 0.48
SNRNP40Q96DI7 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.07■□□□□ 0.48
SNRNP40Q96DI7 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.07■□□□□ 0.48
SNRNP40Q96DI7 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
SNRNP40Q96DI7 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SNRNP40Q96DI7 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.07■□□□□ 0.48
SNRNP40Q96DI7 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.07■□□□□ 0.48
SNRNP40Q96DI7 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.07■□□□□ 0.48
SNRNP40Q96DI7 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SNRNP40Q96DI7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms