Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 BET1L-204ENST00000410108 637 ntTSL 3 BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 AC007322.1-201ENST00000426983 750 ntBASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 AC069236.1-201ENST00000604339 616 ntBASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 GAS2L1P2-201ENST00000436355 1356 ntBASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC22.07■■□□□ 1.12
CCDC40Q4G0X9 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
CCDC40Q4G0X9 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC40Q4G0X9 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC22.06■■□□□ 1.12
CCDC40Q4G0X9 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
CCDC40Q4G0X9 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC40Q4G0X9 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC40Q4G0X9 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC40Q4G0X9 AC100791.3-201ENST00000617619 330 ntBASIC22.06■■□□□ 1.12
CCDC40Q4G0X9 AC008694.1-202ENST00000636953 945 ntBASIC22.06■■□□□ 1.12
CCDC40Q4G0X9 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC22.06■■□□□ 1.12
CCDC40Q4G0X9 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC22.06■■□□□ 1.12
CCDC40Q4G0X9 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CCDC40Q4G0X9 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC22.06■■□□□ 1.12
CCDC40Q4G0X9 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
CCDC40Q4G0X9 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC22.05■■□□□ 1.12
CCDC40Q4G0X9 H19-201ENST00000411754 1788 ntTSL 5 BASIC22.05■■□□□ 1.12
CCDC40Q4G0X9 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC22.05■■□□□ 1.12
CCDC40Q4G0X9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
CCDC40Q4G0X9 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC40Q4G0X9 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC40Q4G0X9 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC40Q4G0X9 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC40Q4G0X9 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
CCDC40Q4G0X9 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CCDC40Q4G0X9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC22.05■■□□□ 1.12
CCDC40Q4G0X9 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC22.05■■□□□ 1.12
CCDC40Q4G0X9 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC40Q4G0X9 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC40Q4G0X9 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC40Q4G0X9 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC40Q4G0X9 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CCDC40Q4G0X9 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
CCDC40Q4G0X9 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC22.04■■□□□ 1.12
CCDC40Q4G0X9 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC22.04■■□□□ 1.12
CCDC40Q4G0X9 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC22.04■■□□□ 1.12
CCDC40Q4G0X9 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
CCDC40Q4G0X9 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC22.04■■□□□ 1.12
CCDC40Q4G0X9 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
CCDC40Q4G0X9 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC22.04■■□□□ 1.12
CCDC40Q4G0X9 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
CCDC40Q4G0X9 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 BID-204ENST00000399767 2129 ntTSL 2 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 APTR-203ENST00000430801 583 ntTSL 5 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 MAZ-216ENST00000616501 991 ntTSL 5 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 MDK-213ENST00000617138 635 ntTSL 2 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC22.03■■□□□ 1.12
CCDC40Q4G0X9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 BX119927.1-201ENST00000636596 1552 ntBASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CCDC40Q4G0X9 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms