Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
CDH4P55283 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CDH4P55283 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
CDH4P55283 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.55■□□□□ 0.88
CDH4P55283 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CDH4P55283 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CDH4P55283 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CDH4P55283 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CDH4P55283 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.54■□□□□ 0.88
CDH4P55283 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CDH4P55283 AC073648.6-201ENST00000641589 218 ntBASIC20.54■□□□□ 0.88
CDH4P55283 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.54■□□□□ 0.88
CDH4P55283 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH4P55283 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.53■□□□□ 0.88
CDH4P55283 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CDH4P55283 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.53■□□□□ 0.88
CDH4P55283 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.53■□□□□ 0.88
CDH4P55283 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.53■□□□□ 0.88
CDH4P55283 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.53■□□□□ 0.88
CDH4P55283 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.53■□□□□ 0.88
CDH4P55283 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.53■□□□□ 0.88
CDH4P55283 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH4P55283 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH4P55283 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CDH4P55283 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDH4P55283 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
CDH4P55283 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.52■□□□□ 0.88
CDH4P55283 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH4P55283 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDH4P55283 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CDH4P55283 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDH4P55283 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDH4P55283 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.52■□□□□ 0.88
CDH4P55283 AC069544.1-201ENST00000609399 999 ntBASIC20.52■□□□□ 0.88
CDH4P55283 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.52■□□□□ 0.88
CDH4P55283 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDH4P55283 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.52■□□□□ 0.88
CDH4P55283 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH4P55283 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.52■□□□□ 0.87
CDH4P55283 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.87
CDH4P55283 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.52■□□□□ 0.87
CDH4P55283 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.51■□□□□ 0.87
CDH4P55283 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH4P55283 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
CDH4P55283 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH4P55283 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CDH4P55283 RPS2P52-201ENST00000469610 820 ntBASIC20.51■□□□□ 0.87
CDH4P55283 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
CDH4P55283 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.51■□□□□ 0.87
CDH4P55283 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.51■□□□□ 0.87
CDH4P55283 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
CDH4P55283 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.51■□□□□ 0.87
CDH4P55283 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH4P55283 KRT16P6-202ENST00000425692 1426 ntBASIC20.51■□□□□ 0.87
CDH4P55283 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH4P55283 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH4P55283 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH4P55283 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH4P55283 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH4P55283 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH4P55283 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH4P55283 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH4P55283 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH4P55283 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.5■□□□□ 0.87
CDH4P55283 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH4P55283 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH4P55283 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH4P55283 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH4P55283 PRORSD1P-201ENST00000295112 541 ntBASIC20.5■□□□□ 0.87
CDH4P55283 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH4P55283 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH4P55283 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms