Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.09■□□□□ 0.81
PTPN4P29074 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.09■□□□□ 0.81
PTPN4P29074 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.09■□□□□ 0.81
PTPN4P29074 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.09■□□□□ 0.81
PTPN4P29074 AC005181.1-201ENST00000604782 1256 ntBASIC20.09■□□□□ 0.81
PTPN4P29074 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.09■□□□□ 0.81
PTPN4P29074 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
PTPN4P29074 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PTPN4P29074 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PTPN4P29074 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
PTPN4P29074 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.08■□□□□ 0.81
PTPN4P29074 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PTPN4P29074 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PTPN4P29074 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PTPN4P29074 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PTPN4P29074 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.08■□□□□ 0.81
PTPN4P29074 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PTPN4P29074 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PTPN4P29074 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.08■□□□□ 0.81
PTPN4P29074 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.08■□□□□ 0.81
PTPN4P29074 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.08■□□□□ 0.81
PTPN4P29074 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
PTPN4P29074 AC010141.2-201ENST00000452426 721 ntBASIC20.08■□□□□ 0.81
PTPN4P29074 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.08■□□□□ 0.81
PTPN4P29074 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PTPN4P29074 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.08■□□□□ 0.81
PTPN4P29074 KRT18P20-201ENST00000548986 1279 ntBASIC20.08■□□□□ 0.81
PTPN4P29074 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
PTPN4P29074 AL050303.2-201ENST00000619798 666 ntBASIC20.08■□□□□ 0.81
PTPN4P29074 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.08■□□□□ 0.81
PTPN4P29074 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
PTPN4P29074 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
PTPN4P29074 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
PTPN4P29074 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
PTPN4P29074 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
PTPN4P29074 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
PTPN4P29074 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
PTPN4P29074 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.07■□□□□ 0.8
PTPN4P29074 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.07■□□□□ 0.8
PTPN4P29074 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.07■□□□□ 0.8
PTPN4P29074 AC083906.2-201ENST00000511578 360 ntBASIC20.07■□□□□ 0.8
PTPN4P29074 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.07■□□□□ 0.8
PTPN4P29074 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
PTPN4P29074 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
PTPN4P29074 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PTPN4P29074 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.07■□□□□ 0.8
PTPN4P29074 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PTPN4P29074 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PTPN4P29074 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
PTPN4P29074 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.06■□□□□ 0.8
PTPN4P29074 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.06■□□□□ 0.8
PTPN4P29074 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PTPN4P29074 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
PTPN4P29074 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PTPN4P29074 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PTPN4P29074 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PTPN4P29074 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PTPN4P29074 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PTPN4P29074 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PTPN4P29074 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.06■□□□□ 0.8
PTPN4P29074 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PTPN4P29074 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.06■□□□□ 0.8
PTPN4P29074 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PTPN4P29074 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
PTPN4P29074 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.06■□□□□ 0.8
PTPN4P29074 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
PTPN4P29074 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
PTPN4P29074 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.06■□□□□ 0.8
PTPN4P29074 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PTPN4P29074 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.06■□□□□ 0.8
PTPN4P29074 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
PTPN4P29074 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PTPN4P29074 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.06■□□□□ 0.8
PTPN4P29074 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTPN4P29074 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.05■□□□□ 0.8
PTPN4P29074 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
PTPN4P29074 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.05■□□□□ 0.8
PTPN4P29074 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTPN4P29074 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTPN4P29074 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PTPN4P29074 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PTPN4P29074 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
PTPN4P29074 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTPN4P29074 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.05■□□□□ 0.8
PTPN4P29074 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTPN4P29074 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.05■□□□□ 0.8
PTPN4P29074 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
PTPN4P29074 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
PTPN4P29074 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTPN4P29074 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms