Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
COL9A1P20849 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
COL9A1P20849 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL9A1P20849 AC069148.1-201ENST00000608741 768 ntBASIC20.77■□□□□ 0.92
COL9A1P20849 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.77■□□□□ 0.92
COL9A1P20849 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL9A1P20849 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL9A1P20849 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL9A1P20849 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.77■□□□□ 0.91
COL9A1P20849 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
COL9A1P20849 AC022898.2-201ENST00000616822 1312 ntBASIC20.77■□□□□ 0.91
COL9A1P20849 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL9A1P20849 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL9A1P20849 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
COL9A1P20849 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
COL9A1P20849 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL9A1P20849 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
COL9A1P20849 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.76■□□□□ 0.91
COL9A1P20849 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.76■□□□□ 0.91
COL9A1P20849 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
COL9A1P20849 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.76■□□□□ 0.91
COL9A1P20849 AC092647.4-201ENST00000457211 535 ntBASIC20.76■□□□□ 0.91
COL9A1P20849 ECEL1P2-202ENST00000465689 757 ntBASIC20.76■□□□□ 0.91
COL9A1P20849 AC092183.1-201ENST00000469884 875 ntBASIC20.76■□□□□ 0.91
COL9A1P20849 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL9A1P20849 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.76■□□□□ 0.91
COL9A1P20849 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL9A1P20849 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL9A1P20849 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL9A1P20849 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL9A1P20849 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL9A1P20849 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL9A1P20849 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.75■□□□□ 0.91
COL9A1P20849 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
COL9A1P20849 AC004870.1-201ENST00000315132 882 ntBASIC20.75■□□□□ 0.91
COL9A1P20849 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL9A1P20849 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.75■□□□□ 0.91
COL9A1P20849 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL9A1P20849 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.75■□□□□ 0.91
COL9A1P20849 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC20.75■□□□□ 0.91
COL9A1P20849 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.75■□□□□ 0.91
COL9A1P20849 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL9A1P20849 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL9A1P20849 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.75■□□□□ 0.91
COL9A1P20849 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.75■□□□□ 0.91
COL9A1P20849 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
COL9A1P20849 GUSBP5-202ENST00000510805 1989 ntBASIC20.75■□□□□ 0.91
COL9A1P20849 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL9A1P20849 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL9A1P20849 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL9A1P20849 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL9A1P20849 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
COL9A1P20849 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL9A1P20849 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL9A1P20849 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL9A1P20849 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL9A1P20849 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.74■□□□□ 0.91
COL9A1P20849 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.74■□□□□ 0.91
COL9A1P20849 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL9A1P20849 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
COL9A1P20849 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL9A1P20849 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.74■□□□□ 0.91
COL9A1P20849 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.74■□□□□ 0.91
COL9A1P20849 KRT16P5-201ENST00000455284 522 ntBASIC20.74■□□□□ 0.91
COL9A1P20849 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.74■□□□□ 0.91
COL9A1P20849 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
COL9A1P20849 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL9A1P20849 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.74■□□□□ 0.91
COL9A1P20849 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.74■□□□□ 0.91
COL9A1P20849 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL9A1P20849 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL9A1P20849 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC20.73■□□□□ 0.91
COL9A1P20849 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.73■□□□□ 0.91
COL9A1P20849 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.73■□□□□ 0.91
COL9A1P20849 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.73■□□□□ 0.91
COL9A1P20849 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.73■□□□□ 0.91
COL9A1P20849 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
COL9A1P20849 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC20.73■□□□□ 0.91
COL9A1P20849 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.73■□□□□ 0.91
COL9A1P20849 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.73■□□□□ 0.91
COL9A1P20849 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL9A1P20849 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL9A1P20849 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms