Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH3P20585 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.97■□□□□ 0.79
MSH3P20585 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
MSH3P20585 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.97■□□□□ 0.79
MSH3P20585 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MSH3P20585 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MSH3P20585 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH3P20585 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH3P20585 DPP3P2-201ENST00000416030 1696 ntBASIC19.97■□□□□ 0.79
MSH3P20585 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSH3P20585 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH3P20585 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH3P20585 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
MSH3P20585 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.96■□□□□ 0.79
MSH3P20585 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH3P20585 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH3P20585 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
MSH3P20585 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.96■□□□□ 0.79
MSH3P20585 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH3P20585 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MSH3P20585 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.96■□□□□ 0.79
MSH3P20585 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.96■□□□□ 0.79
MSH3P20585 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.96■□□□□ 0.79
MSH3P20585 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.96■□□□□ 0.79
MSH3P20585 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
MSH3P20585 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH3P20585 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.96■□□□□ 0.79
MSH3P20585 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH3P20585 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.96■□□□□ 0.79
MSH3P20585 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
MSH3P20585 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH3P20585 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSH3P20585 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MSH3P20585 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
MSH3P20585 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
MSH3P20585 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.96■□□□□ 0.79
MSH3P20585 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
MSH3P20585 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.95■□□□□ 0.78
MSH3P20585 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
MSH3P20585 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH3P20585 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH3P20585 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.95■□□□□ 0.78
MSH3P20585 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH3P20585 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH3P20585 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.95■□□□□ 0.78
MSH3P20585 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.95■□□□□ 0.78
MSH3P20585 AC083880.1-201ENST00000608266 535 ntBASIC19.95■□□□□ 0.78
MSH3P20585 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
MSH3P20585 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
MSH3P20585 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
MSH3P20585 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
MSH3P20585 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.95■□□□□ 0.78
MSH3P20585 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
MSH3P20585 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
MSH3P20585 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH3P20585 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH3P20585 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
MSH3P20585 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.94■□□□□ 0.78
MSH3P20585 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.94■□□□□ 0.78
MSH3P20585 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.94■□□□□ 0.78
MSH3P20585 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH3P20585 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH3P20585 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
MSH3P20585 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
MSH3P20585 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
MSH3P20585 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
MSH3P20585 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH3P20585 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.94■□□□□ 0.78
MSH3P20585 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
MSH3P20585 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
MSH3P20585 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH3P20585 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH3P20585 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
MSH3P20585 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.94■□□□□ 0.78
MSH3P20585 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.94■□□□□ 0.78
MSH3P20585 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 AC092667.1-201ENST00000434301 2586 ntBASIC19.93■□□□□ 0.78
MSH3P20585 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.93■□□□□ 0.78
MSH3P20585 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.93■□□□□ 0.78
MSH3P20585 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.93■□□□□ 0.78
MSH3P20585 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
MSH3P20585 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
MSH3P20585 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
MSH3P20585 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
MSH3P20585 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
MSH3P20585 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms