Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
HMGA1P17096 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.93■□□□□ 0.94
HMGA1P17096 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
HMGA1P17096 TSPY7P-201ENST00000431358 1114 ntBASIC20.93■□□□□ 0.94
HMGA1P17096 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGA1P17096 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.93■□□□□ 0.94
HMGA1P17096 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGA1P17096 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.93■□□□□ 0.94
HMGA1P17096 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
HMGA1P17096 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.93■□□□□ 0.94
HMGA1P17096 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HMGA1P17096 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HMGA1P17096 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGA1P17096 AL135905.2-201ENST00000584934 1404 ntBASIC20.93■□□□□ 0.94
HMGA1P17096 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.93■□□□□ 0.94
HMGA1P17096 NBPF21P-201ENST00000425093 1451 ntBASIC20.93■□□□□ 0.94
HMGA1P17096 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGA1P17096 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGA1P17096 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.93■□□□□ 0.94
HMGA1P17096 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGA1P17096 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGA1P17096 DPP3P2-201ENST00000416030 1696 ntBASIC20.93■□□□□ 0.94
HMGA1P17096 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
HMGA1P17096 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HMGA1P17096 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGA1P17096 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGA1P17096 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.92■□□□□ 0.94
HMGA1P17096 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGA1P17096 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.92■□□□□ 0.94
HMGA1P17096 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGA1P17096 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.92■□□□□ 0.94
HMGA1P17096 AC113410.3-201ENST00000623366 203 ntBASIC20.92■□□□□ 0.94
HMGA1P17096 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGA1P17096 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.92■□□□□ 0.94
HMGA1P17096 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGA1P17096 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGA1P17096 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HMGA1P17096 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
HMGA1P17096 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.92■□□□□ 0.94
HMGA1P17096 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HMGA1P17096 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
HMGA1P17096 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGA1P17096 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGA1P17096 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGA1P17096 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
HMGA1P17096 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
HMGA1P17096 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HMGA1P17096 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.91■□□□□ 0.94
HMGA1P17096 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HMGA1P17096 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.91■□□□□ 0.94
HMGA1P17096 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HMGA1P17096 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.91■□□□□ 0.94
HMGA1P17096 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HMGA1P17096 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.91■□□□□ 0.94
HMGA1P17096 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
HMGA1P17096 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.91■□□□□ 0.94
HMGA1P17096 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.91■□□□□ 0.94
HMGA1P17096 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.91■□□□□ 0.94
HMGA1P17096 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGA1P17096 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGA1P17096 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
HMGA1P17096 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGA1P17096 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.9■□□□□ 0.94
HMGA1P17096 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.9■□□□□ 0.94
HMGA1P17096 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.9■□□□□ 0.94
HMGA1P17096 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
HMGA1P17096 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGA1P17096 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
HMGA1P17096 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.9■□□□□ 0.94
HMGA1P17096 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.9■□□□□ 0.94
HMGA1P17096 KRT16P5-201ENST00000455284 522 ntBASIC20.9■□□□□ 0.94
HMGA1P17096 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.9■□□□□ 0.94
HMGA1P17096 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.9■□□□□ 0.94
HMGA1P17096 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.9■□□□□ 0.94
HMGA1P17096 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
HMGA1P17096 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGA1P17096 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
HMGA1P17096 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
HMGA1P17096 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.9■□□□□ 0.94
HMGA1P17096 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HMGA1P17096 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.9■□□□□ 0.94
HMGA1P17096 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGA1P17096 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HMGA1P17096 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HMGA1P17096 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
HMGA1P17096 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.89■□□□□ 0.94
HMGA1P17096 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HMGA1P17096 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.89■□□□□ 0.93
HMGA1P17096 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGA1P17096 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HMGA1P17096 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HMGA1P17096 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.89■□□□□ 0.93
HMGA1P17096 AP001412.1-201ENST00000608405 714 ntBASIC20.89■□□□□ 0.93
HMGA1P17096 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.89■□□□□ 0.93
HMGA1P17096 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGA1P17096 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGA1P17096 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGA1P17096 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.89■□□□□ 0.93
HMGA1P17096 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.89■□□□□ 0.93
HMGA1P17096 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms