Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.83■□□□□ 0.76
COL6A2P12110 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
COL6A2P12110 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A2P12110 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A2P12110 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
COL6A2P12110 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.82■□□□□ 0.76
COL6A2P12110 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A2P12110 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A2P12110 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.82■□□□□ 0.76
COL6A2P12110 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A2P12110 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.82■□□□□ 0.76
COL6A2P12110 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
COL6A2P12110 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A2P12110 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A2P12110 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.82■□□□□ 0.76
COL6A2P12110 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.82■□□□□ 0.76
COL6A2P12110 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL6A2P12110 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.82■□□□□ 0.76
COL6A2P12110 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.81■□□□□ 0.76
COL6A2P12110 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A2P12110 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A2P12110 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A2P12110 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.81■□□□□ 0.76
COL6A2P12110 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A2P12110 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A2P12110 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A2P12110 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A2P12110 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL6A2P12110 BX323043.1-201ENST00000641006 1765 ntBASIC19.8■□□□□ 0.76
COL6A2P12110 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.8■□□□□ 0.76
COL6A2P12110 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A2P12110 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A2P12110 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A2P12110 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.8■□□□□ 0.76
COL6A2P12110 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A2P12110 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A2P12110 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.8■□□□□ 0.76
COL6A2P12110 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.8■□□□□ 0.76
COL6A2P12110 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.8■□□□□ 0.76
COL6A2P12110 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A2P12110 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
COL6A2P12110 AC013268.1-206ENST00000638368 961 ntBASIC19.8■□□□□ 0.76
COL6A2P12110 AC112229.1-201ENST00000639295 961 ntBASIC19.8■□□□□ 0.76
COL6A2P12110 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A2P12110 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A2P12110 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.8■□□□□ 0.76
COL6A2P12110 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A2P12110 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A2P12110 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
COL6A2P12110 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A2P12110 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A2P12110 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.8■□□□□ 0.76
COL6A2P12110 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A2P12110 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
COL6A2P12110 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.79■□□□□ 0.76
COL6A2P12110 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 AC009237.14-201ENST00000609975 1594 ntBASIC19.79■□□□□ 0.76
COL6A2P12110 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
COL6A2P12110 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.79■□□□□ 0.76
COL6A2P12110 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.79■□□□□ 0.76
COL6A2P12110 KRT18P11-201ENST00000435214 1283 ntBASIC19.79■□□□□ 0.76
COL6A2P12110 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.79■□□□□ 0.76
COL6A2P12110 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.79■□□□□ 0.76
COL6A2P12110 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
COL6A2P12110 NTF6G-201ENST00000591094 616 ntBASIC19.79■□□□□ 0.76
COL6A2P12110 AC100791.3-201ENST00000617619 330 ntBASIC19.79■□□□□ 0.76
COL6A2P12110 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.79■□□□□ 0.76
COL6A2P12110 TREX1-205ENST00000625293 1783 ntBASIC19.79■□□□□ 0.76
COL6A2P12110 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.79■□□□□ 0.76
COL6A2P12110 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
COL6A2P12110 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.79■□□□□ 0.76
COL6A2P12110 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
COL6A2P12110 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.78■□□□□ 0.76
COL6A2P12110 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A2P12110 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.78■□□□□ 0.76
COL6A2P12110 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.78■□□□□ 0.76
COL6A2P12110 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A2P12110 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A2P12110 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
COL6A2P12110 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.78■□□□□ 0.76
COL6A2P12110 PTBP1P-201ENST00000554374 1601 ntBASIC19.78■□□□□ 0.76
COL6A2P12110 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A2P12110 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A2P12110 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
COL6A2P12110 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
COL6A2P12110 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
COL6A2P12110 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms