Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SNX3O60493 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SNX3O60493 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SNX3O60493 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
SNX3O60493 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SNX3O60493 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
SNX3O60493 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.77■□□□□ 0.76
SNX3O60493 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SNX3O60493 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SNX3O60493 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.77■□□□□ 0.76
SNX3O60493 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SNX3O60493 AC053503.5-201ENST00000601508 636 ntBASIC19.77■□□□□ 0.76
SNX3O60493 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.77■□□□□ 0.76
SNX3O60493 RARRES2P11-201ENST00000635158 484 ntBASIC19.77■□□□□ 0.76
SNX3O60493 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SNX3O60493 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SNX3O60493 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
SNX3O60493 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
SNX3O60493 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SNX3O60493 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.76■□□□□ 0.75
SNX3O60493 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.76■□□□□ 0.75
SNX3O60493 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.76■□□□□ 0.75
SNX3O60493 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
SNX3O60493 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19.76■□□□□ 0.75
SNX3O60493 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
SNX3O60493 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.76■□□□□ 0.75
SNX3O60493 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC19.76■□□□□ 0.75
SNX3O60493 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.76■□□□□ 0.75
SNX3O60493 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SNX3O60493 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.76■□□□□ 0.75
SNX3O60493 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SNX3O60493 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.75■□□□□ 0.75
SNX3O60493 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.75■□□□□ 0.75
SNX3O60493 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.75■□□□□ 0.75
SNX3O60493 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.75■□□□□ 0.75
SNX3O60493 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.75■□□□□ 0.75
SNX3O60493 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SNX3O60493 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SNX3O60493 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SNX3O60493 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SNX3O60493 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SNX3O60493 AC079598.2-202ENST00000546624 1451 ntBASIC19.75■□□□□ 0.75
SNX3O60493 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SNX3O60493 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.75■□□□□ 0.75
SNX3O60493 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SNX3O60493 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.75■□□□□ 0.75
SNX3O60493 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SNX3O60493 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
SNX3O60493 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.75■□□□□ 0.75
SNX3O60493 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.75■□□□□ 0.75
SNX3O60493 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
SNX3O60493 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
SNX3O60493 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SNX3O60493 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SNX3O60493 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SNX3O60493 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SNX3O60493 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SNX3O60493 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SNX3O60493 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
SNX3O60493 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.74■□□□□ 0.75
SNX3O60493 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SNX3O60493 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SNX3O60493 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.74■□□□□ 0.75
SNX3O60493 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SNX3O60493 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.74■□□□□ 0.75
SNX3O60493 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SNX3O60493 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.74■□□□□ 0.75
SNX3O60493 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SNX3O60493 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SNX3O60493 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SNX3O60493 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SNX3O60493 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.74■□□□□ 0.75
SNX3O60493 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.74■□□□□ 0.75
SNX3O60493 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
SNX3O60493 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.74■□□□□ 0.75
SNX3O60493 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SNX3O60493 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SNX3O60493 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SNX3O60493 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SNX3O60493 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SNX3O60493 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.73■□□□□ 0.75
SNX3O60493 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SNX3O60493 AC104581.1-202ENST00000635932 2618 ntBASIC19.73■□□□□ 0.75
SNX3O60493 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.73■□□□□ 0.75
SNX3O60493 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SNX3O60493 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms