Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB3O15347 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.16■□□□□ 0.18
HMGB3O15347 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB3O15347 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB3O15347 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.16■□□□□ 0.18
HMGB3O15347 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB3O15347 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
HMGB3O15347 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB3O15347 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HMGB3O15347 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC16.15■□□□□ 0.18
HMGB3O15347 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.15■□□□□ 0.18
HMGB3O15347 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
HMGB3O15347 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HMGB3O15347 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
HMGB3O15347 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 TCF3P1-201ENST00000423021 1937 ntBASIC16.15■□□□□ 0.18
HMGB3O15347 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HMGB3O15347 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB3O15347 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGB3O15347 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HMGB3O15347 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.18
HMGB3O15347 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
HMGB3O15347 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.18
HMGB3O15347 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.14■□□□□ 0.18
HMGB3O15347 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
HMGB3O15347 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
HMGB3O15347 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
HMGB3O15347 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.14■□□□□ 0.17
HMGB3O15347 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB3O15347 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB3O15347 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB3O15347 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
HMGB3O15347 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB3O15347 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
HMGB3O15347 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB3O15347 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB3O15347 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
HMGB3O15347 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB3O15347 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB3O15347 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB3O15347 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB3O15347 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB3O15347 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB3O15347 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB3O15347 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB3O15347 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB3O15347 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HMGB3O15347 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB3O15347 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB3O15347 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
HMGB3O15347 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB3O15347 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB3O15347 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB3O15347 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
HMGB3O15347 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB3O15347 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB3O15347 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB3O15347 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGB3O15347 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB3O15347 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB3O15347 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
HMGB3O15347 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB3O15347 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
HMGB3O15347 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGB3O15347 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
HMGB3O15347 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB3O15347 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB3O15347 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB3O15347 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16.12■□□□□ 0.17
HMGB3O15347 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB3O15347 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
HMGB3O15347 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
HMGB3O15347 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB3O15347 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB3O15347 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB3O15347 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
HMGB3O15347 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGB3O15347 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB3O15347 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC16.12■□□□□ 0.17
HMGB3O15347 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB3O15347 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB3O15347 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB3O15347 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB3O15347 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HMGB3O15347 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.12■□□□□ 0.17
HMGB3O15347 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms