Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TM9SF3Q9HD45 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 AC211429.1-201ENST00000415277 523 ntBASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 TSPY7P-201ENST00000431358 1114 ntBASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 AC110285.5-201ENST00000611501 352 ntBASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.12■□□□□ 0.81
TM9SF3Q9HD45 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 Z98882.1-201ENST00000622160 2253 ntBASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 AL049637.2-201ENST00000641778 930 ntBASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TM9SF3Q9HD45 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TM9SF3Q9HD45 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 KRT17P2-201ENST00000300992 1314 ntBASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 BX088651.1-201ENST00000540551 451 ntBASIC20.09■□□□□ 0.81
TM9SF3Q9HD45 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms