Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 AF106564.1-201ENST00000607058 2553 ntBASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 AC026310.3-201ENST00000625186 2373 ntBASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC3Q9BQI4 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC3Q9BQI4 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC3Q9BQI4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 AC073912.3-201ENST00000624414 853 ntBASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 AC011484.1-201ENST00000377652 1995 ntBASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC3Q9BQI4 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 AC012618.2-201ENST00000428058 849 ntBASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 AC133681.1-201ENST00000465482 601 ntBASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 AC233702.5-201ENST00000584107 538 ntBASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
CCDC3Q9BQI4 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 RPS2P55-201ENST00000397318 883 ntBASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 AC107956.1-201ENST00000494359 873 ntBASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 AC121338.2-201ENST00000622535 1744 ntBASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC3Q9BQI4 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC3Q9BQI4 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC3Q9BQI4 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC3Q9BQI4 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC3Q9BQI4 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC3Q9BQI4 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC3Q9BQI4 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC3Q9BQI4 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC3Q9BQI4 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms