Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 AC060766.5-201ENST00000590539 871 ntBASIC20.65■□□□□ 0.9
RTL3Q8N8U3 AL031963.3-201ENST00000606441 850 ntBASIC20.65■□□□□ 0.9
RTL3Q8N8U3 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
RTL3Q8N8U3 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
RTL3Q8N8U3 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.64■□□□□ 0.9
RTL3Q8N8U3 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.64■□□□□ 0.9
RTL3Q8N8U3 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.64■□□□□ 0.9
RTL3Q8N8U3 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
RTL3Q8N8U3 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
RTL3Q8N8U3 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
RTL3Q8N8U3 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RTL3Q8N8U3 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RTL3Q8N8U3 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.64■□□□□ 0.89
RTL3Q8N8U3 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RTL3Q8N8U3 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RTL3Q8N8U3 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RTL3Q8N8U3 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RTL3Q8N8U3 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RTL3Q8N8U3 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RTL3Q8N8U3 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RTL3Q8N8U3 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RTL3Q8N8U3 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.64■□□□□ 0.89
RTL3Q8N8U3 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC20.63■□□□□ 0.89
RTL3Q8N8U3 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 KRT8P20-201ENST00000423953 1409 ntBASIC20.62■□□□□ 0.89
RTL3Q8N8U3 KRT8P17-201ENST00000453110 1448 ntBASIC20.62■□□□□ 0.89
RTL3Q8N8U3 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 AC092368.3-202ENST00000574180 1591 ntBASIC20.62■□□□□ 0.89
RTL3Q8N8U3 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.62■□□□□ 0.89
RTL3Q8N8U3 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 PNMA6B-201ENST00000538162 1200 ntBASIC20.61■□□□□ 0.89
RTL3Q8N8U3 KRT18P6-201ENST00000555540 1265 ntBASIC20.61■□□□□ 0.89
RTL3Q8N8U3 AC005829.2-201ENST00000571422 1056 ntBASIC20.61■□□□□ 0.89
RTL3Q8N8U3 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTL3Q8N8U3 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms