Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL7A1Q02388 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC14.53□□□□□ -0.08
COL7A1Q02388 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL7A1Q02388 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL7A1Q02388 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL7A1Q02388 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL7A1Q02388 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL7A1Q02388 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL7A1Q02388 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL7A1Q02388 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL7A1Q02388 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL7A1Q02388 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL7A1Q02388 PPP1R14BP5-201ENST00000440334 435 ntBASIC14.52□□□□□ -0.08
COL7A1Q02388 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL7A1Q02388 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL7A1Q02388 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC14.52□□□□□ -0.08
COL7A1Q02388 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL7A1Q02388 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL7A1Q02388 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL7A1Q02388 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC14.52□□□□□ -0.08
COL7A1Q02388 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
COL7A1Q02388 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL7A1Q02388 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC14.52□□□□□ -0.09
COL7A1Q02388 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL7A1Q02388 AC091390.4-202ENST00000476426 537 ntBASIC14.52□□□□□ -0.09
COL7A1Q02388 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC14.52□□□□□ -0.09
COL7A1Q02388 AC139887.4-201ENST00000607877 719 ntBASIC14.52□□□□□ -0.09
COL7A1Q02388 VPS72-207ENST00000640458 689 ntTSL 5 BASIC14.52□□□□□ -0.09
COL7A1Q02388 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL7A1Q02388 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
COL7A1Q02388 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
COL7A1Q02388 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC14.52□□□□□ -0.09
COL7A1Q02388 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
COL7A1Q02388 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC14.52□□□□□ -0.09
COL7A1Q02388 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC14.52□□□□□ -0.09
COL7A1Q02388 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC14.52□□□□□ -0.09
COL7A1Q02388 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
COL7A1Q02388 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL7A1Q02388 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC14.51□□□□□ -0.09
COL7A1Q02388 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL7A1Q02388 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
COL7A1Q02388 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL7A1Q02388 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL7A1Q02388 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL7A1Q02388 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL7A1Q02388 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL7A1Q02388 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC14.51□□□□□ -0.09
COL7A1Q02388 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
COL7A1Q02388 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
COL7A1Q02388 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC14.51□□□□□ -0.09
COL7A1Q02388 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL7A1Q02388 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC14.51□□□□□ -0.09
COL7A1Q02388 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
COL7A1Q02388 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
COL7A1Q02388 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL7A1Q02388 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL7A1Q02388 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL7A1Q02388 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC14.51□□□□□ -0.09
COL7A1Q02388 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC14.51□□□□□ -0.09
COL7A1Q02388 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL7A1Q02388 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC14.51□□□□□ -0.09
COL7A1Q02388 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL7A1Q02388 ABBA01031674.1-201ENST00000635145 728 ntBASIC14.51□□□□□ -0.09
COL7A1Q02388 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
COL7A1Q02388 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL7A1Q02388 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC14.5□□□□□ -0.09
COL7A1Q02388 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC14.5□□□□□ -0.09
COL7A1Q02388 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL7A1Q02388 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL7A1Q02388 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC14.5□□□□□ -0.09
COL7A1Q02388 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC14.5□□□□□ -0.09
COL7A1Q02388 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC14.5□□□□□ -0.09
COL7A1Q02388 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC14.5□□□□□ -0.09
COL7A1Q02388 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL7A1Q02388 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
COL7A1Q02388 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL7A1Q02388 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC14.5□□□□□ -0.09
COL7A1Q02388 AP002982.1-201ENST00000492365 877 ntBASIC14.5□□□□□ -0.09
COL7A1Q02388 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL7A1Q02388 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC14.5□□□□□ -0.09
COL7A1Q02388 AC004263.2-201ENST00000617183 678 ntBASIC14.5□□□□□ -0.09
COL7A1Q02388 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL7A1Q02388 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC14.5□□□□□ -0.09
COL7A1Q02388 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL7A1Q02388 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
COL7A1Q02388 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC14.5□□□□□ -0.09
COL7A1Q02388 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL7A1Q02388 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL7A1Q02388 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL7A1Q02388 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL7A1Q02388 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL7A1Q02388 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC14.49□□□□□ -0.09
COL7A1Q02388 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC14.49□□□□□ -0.09
COL7A1Q02388 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC14.49□□□□□ -0.09
COL7A1Q02388 CLEC4GP1-201ENST00000596555 870 ntBASIC14.49□□□□□ -0.09
COL7A1Q02388 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL7A1Q02388 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL7A1Q02388 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL7A1Q02388 COPE-203ENST00000351079 907 ntTSL 2 BASIC14.49□□□□□ -0.09
COL7A1Q02388 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms