Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
IRX4P78413 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.84■□□□□ 0.93
IRX4P78413 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.84■□□□□ 0.93
IRX4P78413 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
IRX4P78413 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
IRX4P78413 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
IRX4P78413 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.84■□□□□ 0.93
IRX4P78413 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
IRX4P78413 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.84■□□□□ 0.93
IRX4P78413 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
IRX4P78413 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
IRX4P78413 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
IRX4P78413 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
IRX4P78413 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
IRX4P78413 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.83■□□□□ 0.93
IRX4P78413 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
IRX4P78413 PLK5-205ENST00000642079 1969 ntBASIC20.83■□□□□ 0.93
IRX4P78413 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
IRX4P78413 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
IRX4P78413 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
IRX4P78413 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
IRX4P78413 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
IRX4P78413 POU5F1P4-201ENST00000413175 1085 ntBASIC20.83■□□□□ 0.93
IRX4P78413 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.83■□□□□ 0.93
IRX4P78413 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.83■□□□□ 0.93
IRX4P78413 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.83■□□□□ 0.93
IRX4P78413 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.83■□□□□ 0.93
IRX4P78413 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.83■□□□□ 0.93
IRX4P78413 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
IRX4P78413 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
IRX4P78413 RBM17P2-201ENST00000616397 1405 ntBASIC20.83■□□□□ 0.93
IRX4P78413 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
IRX4P78413 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
IRX4P78413 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
IRX4P78413 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
IRX4P78413 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.83■□□□□ 0.92
IRX4P78413 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
IRX4P78413 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
IRX4P78413 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
IRX4P78413 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
IRX4P78413 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
IRX4P78413 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
IRX4P78413 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
IRX4P78413 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
IRX4P78413 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
IRX4P78413 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
IRX4P78413 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
IRX4P78413 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.82■□□□□ 0.92
IRX4P78413 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.82■□□□□ 0.92
IRX4P78413 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.82■□□□□ 0.92
IRX4P78413 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.82■□□□□ 0.92
IRX4P78413 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.82■□□□□ 0.92
IRX4P78413 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
IRX4P78413 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
IRX4P78413 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.82■□□□□ 0.92
IRX4P78413 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
IRX4P78413 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.81■□□□□ 0.92
IRX4P78413 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.81■□□□□ 0.92
IRX4P78413 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
IRX4P78413 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
IRX4P78413 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
IRX4P78413 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
IRX4P78413 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
IRX4P78413 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
IRX4P78413 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
IRX4P78413 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
IRX4P78413 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.81■□□□□ 0.92
IRX4P78413 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.81■□□□□ 0.92
IRX4P78413 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
IRX4P78413 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
IRX4P78413 UBE2SP1-201ENST00000450587 669 ntBASIC20.81■□□□□ 0.92
IRX4P78413 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.81■□□□□ 0.92
IRX4P78413 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
IRX4P78413 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
IRX4P78413 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.81■□□□□ 0.92
IRX4P78413 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
IRX4P78413 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
IRX4P78413 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
IRX4P78413 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
IRX4P78413 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
IRX4P78413 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
IRX4P78413 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.8■□□□□ 0.92
IRX4P78413 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
IRX4P78413 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.8■□□□□ 0.92
IRX4P78413 AC006128.1-201ENST00000624704 1661 ntBASIC20.8■□□□□ 0.92
IRX4P78413 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
IRX4P78413 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.8■□□□□ 0.92
IRX4P78413 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.8■□□□□ 0.92
IRX4P78413 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
IRX4P78413 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
IRX4P78413 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
IRX4P78413 AC073314.1-201ENST00000568729 2216 ntBASIC20.8■□□□□ 0.92
IRX4P78413 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
IRX4P78413 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
IRX4P78413 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
IRX4P78413 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
IRX4P78413 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
IRX4P78413 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
IRX4P78413 LSM12P1-201ENST00000411836 588 ntBASIC20.8■□□□□ 0.92
IRX4P78413 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms