Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL5A3P25940 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
COL5A3P25940 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC25.6■■□□□ 1.69
COL5A3P25940 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC25.6■■□□□ 1.69
COL5A3P25940 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC25.6■■□□□ 1.69
COL5A3P25940 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC25.6■■□□□ 1.69
COL5A3P25940 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
COL5A3P25940 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC25.6■■□□□ 1.69
COL5A3P25940 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL5A3P25940 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL5A3P25940 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
COL5A3P25940 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
COL5A3P25940 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL5A3P25940 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC25.59■■□□□ 1.69
COL5A3P25940 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC25.59■■□□□ 1.69
COL5A3P25940 NAPSB-206ENST00000562112 1266 ntBASIC25.59■■□□□ 1.69
COL5A3P25940 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL5A3P25940 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL5A3P25940 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL5A3P25940 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL5A3P25940 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL5A3P25940 MESTP1-201ENST00000404287 994 ntBASIC25.58■■□□□ 1.69
COL5A3P25940 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC25.58■■□□□ 1.69
COL5A3P25940 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
COL5A3P25940 NT5C-211ENST00000582170 653 ntTSL 3 BASIC25.58■■□□□ 1.69
COL5A3P25940 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL5A3P25940 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC25.58■■□□□ 1.69
COL5A3P25940 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC25.58■■□□□ 1.69
COL5A3P25940 AC244015.2-201ENST00000616358 1861 ntBASIC25.58■■□□□ 1.69
COL5A3P25940 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC25.58■■□□□ 1.69
COL5A3P25940 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
COL5A3P25940 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.68
COL5A3P25940 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL5A3P25940 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL5A3P25940 LTBR-211ENST00000543190 785 ntTSL 3 BASIC25.57■■□□□ 1.68
COL5A3P25940 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
COL5A3P25940 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC25.57■■□□□ 1.68
COL5A3P25940 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC25.57■■□□□ 1.68
COL5A3P25940 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL5A3P25940 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
COL5A3P25940 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL5A3P25940 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC25.57■■□□□ 1.68
COL5A3P25940 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
COL5A3P25940 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL5A3P25940 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC25.57■■□□□ 1.68
COL5A3P25940 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC25.57■■□□□ 1.68
COL5A3P25940 DUX4L26-201ENST00000489078 1255 ntBASIC25.57■■□□□ 1.68
COL5A3P25940 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC25.57■■□□□ 1.68
COL5A3P25940 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC25.57■■□□□ 1.68
COL5A3P25940 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
COL5A3P25940 CFL2-205ENST00000555765 632 ntTSL 2 BASIC25.57■■□□□ 1.68
COL5A3P25940 AC005363.2-201ENST00000618631 242 ntBASIC25.57■■□□□ 1.68
COL5A3P25940 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC25.57■■□□□ 1.68
COL5A3P25940 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL5A3P25940 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC25.56■■□□□ 1.68
COL5A3P25940 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL5A3P25940 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL5A3P25940 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL5A3P25940 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC25.56■■□□□ 1.68
COL5A3P25940 ABBA01031674.1-201ENST00000635145 728 ntBASIC25.56■■□□□ 1.68
COL5A3P25940 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
COL5A3P25940 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC25.56■■□□□ 1.68
COL5A3P25940 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL5A3P25940 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
COL5A3P25940 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
COL5A3P25940 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
COL5A3P25940 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC25.55■■□□□ 1.68
COL5A3P25940 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC25.55■■□□□ 1.68
COL5A3P25940 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
COL5A3P25940 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
COL5A3P25940 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
COL5A3P25940 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL5A3P25940 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL5A3P25940 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC25.55■■□□□ 1.68
COL5A3P25940 C2orf69P3-201ENST00000565542 1120 ntBASIC25.55■■□□□ 1.68
COL5A3P25940 DGCR10-201ENST00000609839 495 ntBASIC25.55■■□□□ 1.68
COL5A3P25940 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC25.55■■□□□ 1.68
COL5A3P25940 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
COL5A3P25940 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
COL5A3P25940 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL5A3P25940 H19-201ENST00000411754 1788 ntTSL 5 BASIC25.55■■□□□ 1.68
COL5A3P25940 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
COL5A3P25940 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC25.54■■□□□ 1.68
COL5A3P25940 AC006011.2-201ENST00000621313 1158 ntBASIC25.54■■□□□ 1.68
COL5A3P25940 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC25.54■■□□□ 1.68
COL5A3P25940 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC25.54■■□□□ 1.68
COL5A3P25940 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC25.54■■□□□ 1.68
COL5A3P25940 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC25.54■■□□□ 1.68
COL5A3P25940 YBX1P10-201ENST00000444752 975 ntBASIC25.54■■□□□ 1.68
COL5A3P25940 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC25.54■■□□□ 1.68
COL5A3P25940 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC25.54■■□□□ 1.68
COL5A3P25940 TPM1-226ENST00000560959 925 ntTSL 2 BASIC25.54■■□□□ 1.68
COL5A3P25940 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC25.54■■□□□ 1.68
COL5A3P25940 CR392000.1-201ENST00000624770 1228 ntBASIC25.54■■□□□ 1.68
COL5A3P25940 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
COL5A3P25940 KRT18P22-201ENST00000402024 1347 ntBASIC25.53■■□□□ 1.68
COL5A3P25940 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
COL5A3P25940 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC25.53■■□□□ 1.68
COL5A3P25940 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC25.53■■□□□ 1.68
COL5A3P25940 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms