Protein–RNA interactions for Protein: P20036

HLA-DPA1, HLA class II histocompatibility antigen, DP alpha 1 chain, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1P20036 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.32■□□□□ 0.84
HLA-DPA1P20036 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DPA1P20036 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HLA-DPA1P20036 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.32■□□□□ 0.84
HLA-DPA1P20036 C2orf69P4-201ENST00000565394 541 ntBASIC20.32■□□□□ 0.84
HLA-DPA1P20036 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.32■□□□□ 0.84
HLA-DPA1P20036 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DPA1P20036 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.32■□□□□ 0.84
HLA-DPA1P20036 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DPA1P20036 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DPA1P20036 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HLA-DPA1P20036 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HLA-DPA1P20036 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 SLC29A4P1-201ENST00000398760 971 ntBASIC20.31■□□□□ 0.84
HLA-DPA1P20036 MIPEPP3-201ENST00000412105 444 ntBASIC20.31■□□□□ 0.84
HLA-DPA1P20036 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.31■□□□□ 0.84
HLA-DPA1P20036 GUSBP6-202ENST00000438529 1198 ntBASIC20.31■□□□□ 0.84
HLA-DPA1P20036 TSPY6P-201ENST00000448518 926 ntBASIC20.31■□□□□ 0.84
HLA-DPA1P20036 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.31■□□□□ 0.84
HLA-DPA1P20036 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HLA-DPA1P20036 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HLA-DPA1P20036 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DPA1P20036 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DPA1P20036 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DPA1P20036 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DPA1P20036 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.29■□□□□ 0.84
HLA-DPA1P20036 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DPA1P20036 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.29■□□□□ 0.84
HLA-DPA1P20036 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DPA1P20036 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.29■□□□□ 0.84
HLA-DPA1P20036 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DPA1P20036 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DPA1P20036 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
HLA-DPA1P20036 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HLA-DPA1P20036 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 AC092118.2-201ENST00000613495 667 ntBASIC20.28■□□□□ 0.84
HLA-DPA1P20036 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.28■□□□□ 0.84
HLA-DPA1P20036 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
HLA-DPA1P20036 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HLA-DPA1P20036 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.27■□□□□ 0.84
HLA-DPA1P20036 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms