Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PACSIN2-206ENST00000418133 622 ntTSL 514.6□□□□□ -0.073e-6■■■■■ 147.8
SF3B1O75533 PITPNA-205ENST00000573231 504 ntTSL 411.37□□□□□ -0.593e-6■■■■■ 147.8
SF3B1O75533 TOP3A-203ENST00000469739 3196 ntTSL 29.49□□□□□ -0.893e-6■■■■■ 147.8
SF3B1O75533 PITPNA-208ENST00000575895 591 ntTSL 46.65□□□□□ -1.353e-6■■■■■ 147.8
SF3B1O75533 PITPNA-206ENST00000574991 627 ntTSL 36.28□□□□□ -1.43e-6■■■■■ 147.8
SF3B1O75533 PACSIN2-209ENST00000453079 505 ntTSL 24.98□□□□□ -1.613e-6■■■■■ 147.8
SF3B1O75533 ERI3-204ENST00000456170 1103 ntTSL 514.32□□□□□ -0.129e-7■■■■■ 147.7
SF3B1O75533 ERI3-202ENST00000372259 1332 ntTSL 5 BASIC11.03□□□□□ -0.649e-7■■■■■ 147.7
SF3B1O75533 RANBP3-215ENST00000588879 535 ntTSL 520.17■□□□□ 0.821e-6■■■■■ 147.7
SF3B1O75533 RANBP3-210ENST00000587463 461 ntTSL 520.17■□□□□ 0.821e-6■■■■■ 147.7
SF3B1O75533 RANBP3-223ENST00000591736 573 ntTSL 420.17■□□□□ 0.821e-6■■■■■ 147.7
SF3B1O75533 RANBP3-224ENST00000591881 575 ntTSL 519.01■□□□□ 0.631e-6■■■■■ 147.7
SF3B1O75533 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.541e-6■■■■■ 147.7
SF3B1O75533 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.461e-6■■■■■ 147.7
SF3B1O75533 RANBP3-222ENST00000591333 557 ntTSL 417.5■□□□□ 0.391e-6■■■■■ 147.7
SF3B1O75533 RANBP3-211ENST00000587479 547 ntTSL 417.32■□□□□ 0.361e-6■■■■■ 147.7
SF3B1O75533 RANBP3-217ENST00000589886 472 ntTSL 416.9■□□□□ 0.31e-6■■■■■ 147.7
SF3B1O75533 RANBP3-221ENST00000591124 575 ntTSL 416.57■□□□□ 0.241e-6■■■■■ 147.7
SF3B1O75533 RANBP3-208ENST00000587263 579 ntTSL 516.41■□□□□ 0.221e-6■■■■■ 147.7
SF3B1O75533 RANBP3-213ENST00000587956 512 ntTSL 515.43■□□□□ 0.061e-6■■■■■ 147.7
SF3B1O75533 RANBP3-229ENST00000592771 1937 ntTSL 1 (best)14.67□□□□□ -0.061e-6■■■■■ 147.7
SF3B1O75533 RANBP3-225ENST00000592133 562 ntTSL 413.54□□□□□ -0.241e-6■■■■■ 147.7
SF3B1O75533 RANBP3-228ENST00000592621 818 ntTSL 512.65□□□□□ -0.381e-6■■■■■ 147.7
SF3B1O75533 RANBP3-203ENST00000439268 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.521e-6■■■■■ 147.7
SF3B1O75533 RANBP3-205ENST00000586117 524 ntTSL 411.75□□□□□ -0.531e-6■■■■■ 147.7
SF3B1O75533 RANBP3-207ENST00000587159 554 ntTSL 511.61□□□□□ -0.551e-6■■■■■ 147.7
SF3B1O75533 RANBP3-202ENST00000340578 3233 ntAPPRIS P4 TSL 1 (best) BASIC11.6□□□□□ -0.551e-6■■■■■ 147.7
SF3B1O75533 RANBP3-219ENST00000590953 571 ntTSL 310.73□□□□□ -0.691e-6■■■■■ 147.7
SF3B1O75533 RANBP3-216ENST00000589353 490 ntTSL 510.55□□□□□ -0.721e-6■■■■■ 147.7
SF3B1O75533 RANBP3-218ENST00000590623 786 ntTSL 58.54□□□□□ -1.041e-6■■■■■ 147.7
SF3B1O75533 RANBP3-204ENST00000585339 566 ntTSL 48.38□□□□□ -1.071e-6■■■■■ 147.7
SF3B1O75533 RANBP3-214ENST00000588010 568 ntTSL 54.67□□□□□ -1.661e-6■■■■■ 147.7
SF3B1O75533 FP236383.1-201ENST00000623860 2498 ntTSL 2 BASIC13.81□□□□□ -0.25e-8■■■■■ 147.6
SF3B1O75533 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC22.13■■□□□ 1.132e-6■■■■■ 147.5
SF3B1O75533 FDXR-218ENST00000583881 1561 ntTSL 221.87■■□□□ 1.092e-6■■■■■ 147.5
SF3B1O75533 FDXR-208ENST00000578473 2482 ntTSL 1 (best)21.57■■□□□ 1.042e-6■■■■■ 147.5
SF3B1O75533 FDXR-206ENST00000577509 1912 ntTSL 221.34■■□□□ 1.012e-6■■■■■ 147.5
SF3B1O75533 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.952e-6■■■■■ 147.5
SF3B1O75533 FDXR-209ENST00000579482 2157 ntTSL 220.09■□□□□ 0.812e-6■■■■■ 147.5
SF3B1O75533 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.672e-6■■■■■ 147.5
SF3B1O75533 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.71■□□□□ 0.592e-6■■■■■ 147.5
SF3B1O75533 STX16-210ENST00000458280 553 ntTSL 424.12■■□□□ 1.458e-8■■■■■ 147.4
SF3B1O75533 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.46■□□□□ 0.558e-8■■■■■ 147.4
SF3B1O75533 STX16-208ENST00000412911 560 ntTSL 418.09■□□□□ 0.498e-8■■■■■ 147.4
SF3B1O75533 STX16-217ENST00000490700 661 ntTSL 317.75■□□□□ 0.438e-8■■■■■ 147.4
SF3B1O75533 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.434e-6■■■■■ 147.4
SF3B1O75533 STX16-201ENST00000312283 785 ntTSL 317.24■□□□□ 0.358e-8■■■■■ 147.4
SF3B1O75533 STX16-215ENST00000476384 936 ntTSL 516.65■□□□□ 0.268e-8■■■■■ 147.4
SF3B1O75533 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.183e-6■■■■■ 147.4
SF3B1O75533 STX16-216ENST00000483434 874 ntTSL 315.56■□□□□ 0.088e-8■■■■■ 147.4
SF3B1O75533 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.054e-6■■■■■ 147.4
SF3B1O75533 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -08e-8■■■■■ 147.4
SF3B1O75533 STX16-211ENST00000460655 572 ntTSL 414.51□□□□□ -0.098e-8■■■■■ 147.4
SF3B1O75533 STX16-213ENST00000467096 942 ntTSL 1 (best)14.4□□□□□ -0.18e-8■■■■■ 147.4
SF3B1O75533 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.148e-8■■■■■ 147.4
SF3B1O75533 STX16-219ENST00000496003 815 ntTSL 513.78□□□□□ -0.28e-8■■■■■ 147.4
SF3B1O75533 STX16-220ENST00000496117 528 ntTSL 512.7□□□□□ -0.388e-8■■■■■ 147.4
SF3B1O75533 STX16-202ENST00000355957 4897 ntTSL 2 BASIC12.46□□□□□ -0.428e-8■■■■■ 147.4
SF3B1O75533 STX16-205ENST00000361830 4318 ntTSL 5 BASIC12.19□□□□□ -0.468e-8■■■■■ 147.4
SF3B1O75533 CPEB3-202ENST00000412050 7664 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.644e-6■■■■■ 147.4
SF3B1O75533 STX16-218ENST00000493301 597 ntTSL 310.86□□□□□ -0.678e-8■■■■■ 147.4
SF3B1O75533 STX16-214ENST00000468590 691 ntTSL 510.86□□□□□ -0.678e-8■■■■■ 147.4
SF3B1O75533 STX16-204ENST00000359617 4273 ntTSL 5 BASIC10.41□□□□□ -0.748e-8■■■■■ 147.4
SF3B1O75533 STX16-203ENST00000358029 4329 ntAPPRIS ALT1 TSL 1 (best) BASIC10.39□□□□□ -0.758e-8■■■■■ 147.4
SF3B1O75533 STX16-206ENST00000371132 4552 ntTSL 1 (best) BASIC10.36□□□□□ -0.758e-8■■■■■ 147.4
SF3B1O75533 STX16-212ENST00000464640 812 ntTSL 27.24□□□□□ -1.258e-8■■■■■ 147.4
SF3B1O75533 RAD51B-224ENST00000557045 528 ntTSL 37.07□□□□□ -1.283e-6■■■■■ 147.4
SF3B1O75533 TMEM241-202ENST00000460322 889 ntTSL 523.7■■□□□ 1.381e-6■■■■■ 147.3
SF3B1O75533 TMEM241-214ENST00000581444 1404 ntTSL 221.67■■□□□ 1.061e-6■■■■■ 147.3
SF3B1O75533 TMEM241-205ENST00000477053 2859 ntTSL 217.74■□□□□ 0.431e-6■■■■■ 147.3
SF3B1O75533 TMEM241-203ENST00000473688 2941 ntTSL 1 (best)17.09■□□□□ 0.331e-6■■■■■ 147.3
SF3B1O75533 TMEM241-208ENST00000542162 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.151e-6■■■■■ 147.3
SF3B1O75533 TMEM241-201ENST00000383233 2934 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.811e-6■■■■■ 147.3
SF3B1O75533 TASP1-206ENST00000480436 2302 ntTSL 515.59■□□□□ 0.092e-7■■■■■ 147.3
SF3B1O75533 TASP1-204ENST00000465381 993 ntTSL 514.95□□□□□ -0.022e-7■■■■■ 147.3
SF3B1O75533 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.172e-7■■■■■ 147.3
SF3B1O75533 TASP1-203ENST00000455532 1000 ntTSL 510.38□□□□□ -0.752e-7■■■■■ 147.3
SF3B1O75533 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.734e-6■■■■■ 147.2
SF3B1O75533 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC13.25□□□□□ -0.294e-6■■■■■ 147.2
SF3B1O75533 LMBR1-214ENST00000461469 560 ntTSL 325.83■■□□□ 1.736e-7■■■■■ 147.2
SF3B1O75533 LMBR1-211ENST00000444719 762 ntTSL 324.39■■□□□ 1.56e-7■■■■■ 147.2
SF3B1O75533 LMBR1-205ENST00000430278 523 ntTSL 422.83■■□□□ 1.256e-7■■■■■ 147.2
SF3B1O75533 LMBR1-208ENST00000434278 678 ntTSL 522.13■■□□□ 1.136e-7■■■■■ 147.2
SF3B1O75533 CHTF18-203ENST00000426047 790 ntTSL 317.37■□□□□ 0.372e-8■■■■■ 147.1
SF3B1O75533 CHTF18-211ENST00000491530 819 ntTSL 516.57■□□□□ 0.242e-8■■■■■ 147.1
SF3B1O75533 FER-204ENST00000504143 3132 ntTSL 54.3□□□□□ -1.723e-6■■■■■ 147.1
SF3B1O75533 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.83e-6■■■■■ 147.1
SF3B1O75533 LIG3-208ENST00000586407 815 ntTSL 530.76■■■□□ 2.521e-14■■■■■ 147.1
SF3B1O75533 MMP17-210ENST00000545671 775 ntTSL 326.87■■□□□ 1.891e-14■■■■■ 147.1
SF3B1O75533 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.832e-7■■■■■ 147.1
SF3B1O75533 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC26.4■■□□□ 1.822e-7■■■■■ 147.1
SF3B1O75533 MMP17-211ENST00000545790 552 ntTSL 225.39■■□□□ 1.661e-14■■■■■ 147.1
SF3B1O75533 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.49■■□□□ 1.354e-6■■■■■ 147.1
SF3B1O75533 TUBA3FP-201ENST00000292748 1678 ntTSL 520.74■□□□□ 0.912e-7■■■■■ 147.1
SF3B1O75533 PQLC3-206ENST00000445921 928 ntTSL 520.44■□□□□ 0.862e-7■■■■■ 147.1
SF3B1O75533 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.84■□□□□ 0.772e-7■■■■■ 147.1
SF3B1O75533 LIG3-215ENST00000592690 722 ntTSL 217.14■□□□□ 0.331e-14■■■■■ 147.1
SF3B1O75533 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.96■□□□□ 0.312e-7■■■■■ 147.1
SF3B1O75533 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.57■□□□□ 0.241e-14■■■■■ 147.1
SF3B1O75533 AC002472.3-201ENST00000640124 621 ntBASIC16.05■□□□□ 0.162e-7■■■■■ 147.1
Retrieved 100 of 46,956 protein–RNA pairs in 1119.5 ms