Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 BX119927.1-201ENST00000636596 1552 ntBASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 AC116562.4-201ENST00000641316 2276 ntBASIC16.19■□□□□ 0.18
TRAV3A0A0B4J244 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 STK25-205ENST00000405883 1904 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 TERF1P5-201ENST00000477545 1207 ntBASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 BRI3-207ENST00000539286 699 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV3A0A0B4J244 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 BMP1-204ENST00000397814 836 ntTSL 4 BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 AL356652.1-201ENST00000615962 565 ntBASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 AC010536.3-201ENST00000620306 533 ntBASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV3A0A0B4J244 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 AC087289.5-201ENST00000586076 3175 ntBASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 AC097381.1-201ENST00000429019 1296 ntBASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV3A0A0B4J244 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms