Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 AC026271.2-201ENST00000428091 497 ntBASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 MFSD11-216ENST00000590393 1141 ntBASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HIF3AQ9Y2N7 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 AC016405.3-201ENST00000607710 860 ntBASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 AFG3L1P-217ENST00000557444 2447 ntBASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HIF3AQ9Y2N7 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 AC016769.1-201ENST00000409132 1010 ntBASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 RARRES2P6-201ENST00000567333 442 ntBASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.18■□□□□ 0.5
HIF3AQ9Y2N7 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 AC006015.1-201ENST00000429970 570 ntBASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HIF3AQ9Y2N7 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HIF3AQ9Y2N7 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HIF3AQ9Y2N7 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.16■□□□□ 0.5
HIF3AQ9Y2N7 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.16■□□□□ 0.5
HIF3AQ9Y2N7 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HIF3AQ9Y2N7 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HIF3AQ9Y2N7 CNN2P6-201ENST00000439038 900 ntBASIC18.16■□□□□ 0.5
HIF3AQ9Y2N7 DUX4L16-201ENST00000555130 1264 ntBASIC18.16■□□□□ 0.5
HIF3AQ9Y2N7 AC100791.3-201ENST00000617619 330 ntBASIC18.16■□□□□ 0.5
HIF3AQ9Y2N7 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.16■□□□□ 0.5
HIF3AQ9Y2N7 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HIF3AQ9Y2N7 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HIF3AQ9Y2N7 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HIF3AQ9Y2N7 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HIF3AQ9Y2N7 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HIF3AQ9Y2N7 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms