Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC25.79■■□□□ 1.72
USP42Q9H9J4 EXOC3-AS1-202ENST00000623673 1663 ntBASIC25.79■■□□□ 1.72
USP42Q9H9J4 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
USP42Q9H9J4 HES2-206ENST00000489730 730 ntTSL 2 BASIC25.79■■□□□ 1.72
USP42Q9H9J4 AF186192.3-201ENST00000583427 947 ntBASIC25.79■■□□□ 1.72
USP42Q9H9J4 AC007375.3-201ENST00000600936 2314 ntBASIC25.79■■□□□ 1.72
USP42Q9H9J4 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC25.79■■□□□ 1.72
USP42Q9H9J4 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.72
USP42Q9H9J4 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
USP42Q9H9J4 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
USP42Q9H9J4 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
USP42Q9H9J4 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
USP42Q9H9J4 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC25.78■■□□□ 1.72
USP42Q9H9J4 CLDN5-201ENST00000403084 2357 ntBASIC25.78■■□□□ 1.72
USP42Q9H9J4 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC25.78■■□□□ 1.72
USP42Q9H9J4 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
USP42Q9H9J4 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC25.78■■□□□ 1.72
USP42Q9H9J4 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC25.78■■□□□ 1.72
USP42Q9H9J4 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
USP42Q9H9J4 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
USP42Q9H9J4 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC25.78■■□□□ 1.72
USP42Q9H9J4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC25.78■■□□□ 1.72
USP42Q9H9J4 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
USP42Q9H9J4 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
USP42Q9H9J4 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
USP42Q9H9J4 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC25.77■■□□□ 1.72
USP42Q9H9J4 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC25.77■■□□□ 1.72
USP42Q9H9J4 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC25.77■■□□□ 1.72
USP42Q9H9J4 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
USP42Q9H9J4 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
USP42Q9H9J4 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
USP42Q9H9J4 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC25.77■■□□□ 1.72
USP42Q9H9J4 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC25.77■■□□□ 1.72
USP42Q9H9J4 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
USP42Q9H9J4 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC25.77■■□□□ 1.72
USP42Q9H9J4 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
USP42Q9H9J4 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC25.77■■□□□ 1.72
USP42Q9H9J4 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
USP42Q9H9J4 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
USP42Q9H9J4 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
USP42Q9H9J4 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC25.76■■□□□ 1.71
USP42Q9H9J4 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
USP42Q9H9J4 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
USP42Q9H9J4 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC25.76■■□□□ 1.71
USP42Q9H9J4 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
USP42Q9H9J4 DYM-203ENST00000442713 2147 ntTSL 2 BASIC25.76■■□□□ 1.71
USP42Q9H9J4 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
USP42Q9H9J4 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
USP42Q9H9J4 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC25.75■■□□□ 1.71
USP42Q9H9J4 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC25.75■■□□□ 1.71
USP42Q9H9J4 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC25.75■■□□□ 1.71
USP42Q9H9J4 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
USP42Q9H9J4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC25.75■■□□□ 1.71
USP42Q9H9J4 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
USP42Q9H9J4 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC25.75■■□□□ 1.71
USP42Q9H9J4 KRT18P35-201ENST00000510488 1269 ntBASIC25.75■■□□□ 1.71
USP42Q9H9J4 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC25.75■■□□□ 1.71
USP42Q9H9J4 RPS15-203ENST00000586096 570 ntTSL 2 BASIC25.75■■□□□ 1.71
USP42Q9H9J4 FEM1AP4-201ENST00000443167 1987 ntBASIC25.75■■□□□ 1.71
USP42Q9H9J4 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
USP42Q9H9J4 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
USP42Q9H9J4 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
USP42Q9H9J4 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
USP42Q9H9J4 HTR7P1-201ENST00000538670 1336 ntBASIC25.74■■□□□ 1.71
USP42Q9H9J4 MMP23A-201ENST00000234610 1017 ntBASIC25.74■■□□□ 1.71
USP42Q9H9J4 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
USP42Q9H9J4 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC25.74■■□□□ 1.71
USP42Q9H9J4 AL121829.2-201ENST00000620908 328 ntBASIC25.74■■□□□ 1.71
USP42Q9H9J4 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC25.74■■□□□ 1.71
USP42Q9H9J4 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
USP42Q9H9J4 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC25.74■■□□□ 1.71
USP42Q9H9J4 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC25.73■■□□□ 1.71
USP42Q9H9J4 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC25.73■■□□□ 1.71
USP42Q9H9J4 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
USP42Q9H9J4 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC25.73■■□□□ 1.71
USP42Q9H9J4 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
USP42Q9H9J4 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
USP42Q9H9J4 AL355355.2-201ENST00000442321 338 ntBASIC25.73■■□□□ 1.71
USP42Q9H9J4 KRT16P5-201ENST00000455284 522 ntBASIC25.73■■□□□ 1.71
USP42Q9H9J4 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC25.73■■□□□ 1.71
USP42Q9H9J4 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC25.73■■□□□ 1.71
USP42Q9H9J4 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
USP42Q9H9J4 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
USP42Q9H9J4 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
USP42Q9H9J4 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
USP42Q9H9J4 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
USP42Q9H9J4 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC25.72■■□□□ 1.71
USP42Q9H9J4 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
USP42Q9H9J4 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
USP42Q9H9J4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
USP42Q9H9J4 PARN-205ENST00000539279 1557 ntTSL 2 BASIC25.72■■□□□ 1.71
USP42Q9H9J4 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
USP42Q9H9J4 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
USP42Q9H9J4 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
USP42Q9H9J4 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC25.72■■□□□ 1.71
USP42Q9H9J4 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC25.72■■□□□ 1.71
USP42Q9H9J4 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC25.72■■□□□ 1.71
USP42Q9H9J4 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC25.72■■□□□ 1.71
USP42Q9H9J4 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC25.72■■□□□ 1.71
USP42Q9H9J4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC25.72■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms