Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RNF39Q9H2S5 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC22.19■■□□□ 1.14
RNF39Q9H2S5 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF39Q9H2S5 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF39Q9H2S5 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF39Q9H2S5 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RNF39Q9H2S5 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
RNF39Q9H2S5 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RNF39Q9H2S5 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RNF39Q9H2S5 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 HES2-205ENST00000487437 968 ntTSL 3 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 AC019227.1-201ENST00000526902 510 ntBASIC22.18■■□□□ 1.14
RNF39Q9H2S5 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 AC025287.4-201ENST00000640173 1240 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RNF39Q9H2S5 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 CRK-204ENST00000574295 1391 ntTSL 5 BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 AL117378.2-201ENST00000622916 1337 ntBASIC22.17■■□□□ 1.14
RNF39Q9H2S5 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 UNC93B4-201ENST00000505679 747 ntBASIC22.17■■□□□ 1.14
RNF39Q9H2S5 DET1-205ENST00000558413 583 ntTSL 4 BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 RN7SL121P-201ENST00000584223 273 ntBASIC22.17■■□□□ 1.14
RNF39Q9H2S5 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC22.17■■□□□ 1.14
RNF39Q9H2S5 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 MTND1P26-201ENST00000440488 538 ntBASIC22.16■■□□□ 1.14
RNF39Q9H2S5 GCSHP5-201ENST00000443090 522 ntBASIC22.16■■□□□ 1.14
RNF39Q9H2S5 AC022395.1-201ENST00000451610 895 ntTSL 2 BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 AP001830.1-201ENST00000528717 692 ntTSL 2 BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 MMD2-204ENST00000612910 778 ntTSL 5 BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 AL356652.1-201ENST00000615962 565 ntBASIC22.16■■□□□ 1.14
RNF39Q9H2S5 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC22.16■■□□□ 1.14
RNF39Q9H2S5 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
RNF39Q9H2S5 AL049796.1-201ENST00000565336 1766 ntBASIC22.15■■□□□ 1.14
RNF39Q9H2S5 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
RNF39Q9H2S5 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RNF39Q9H2S5 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC22.15■■□□□ 1.14
RNF39Q9H2S5 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC22.15■■□□□ 1.14
RNF39Q9H2S5 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RNF39Q9H2S5 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
RNF39Q9H2S5 LINC00565-201ENST00000562710 2331 ntBASIC22.15■■□□□ 1.14
RNF39Q9H2S5 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
RNF39Q9H2S5 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC22.15■■□□□ 1.14
RNF39Q9H2S5 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC22.15■■□□□ 1.14
RNF39Q9H2S5 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
RNF39Q9H2S5 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC22.14■■□□□ 1.14
RNF39Q9H2S5 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
RNF39Q9H2S5 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC22.14■■□□□ 1.14
RNF39Q9H2S5 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
RNF39Q9H2S5 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.14
RNF39Q9H2S5 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms