Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 AC005082.1-201ENST00000413042 2259 ntBASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC28BQ9BUN5 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
CCDC28BQ9BUN5 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC28BQ9BUN5 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC28BQ9BUN5 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
CCDC28BQ9BUN5 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.58■□□□□ 0.73
CCDC28BQ9BUN5 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.58■□□□□ 0.73
CCDC28BQ9BUN5 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC28BQ9BUN5 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC28BQ9BUN5 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC28BQ9BUN5 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC28BQ9BUN5 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC28BQ9BUN5 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.58■□□□□ 0.72
CCDC28BQ9BUN5 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC28BQ9BUN5 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC28BQ9BUN5 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC28BQ9BUN5 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.58■□□□□ 0.72
CCDC28BQ9BUN5 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC28BQ9BUN5 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CCDC28BQ9BUN5 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC28BQ9BUN5 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.58■□□□□ 0.72
CCDC28BQ9BUN5 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.72
CCDC28BQ9BUN5 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 AP001330.3-201ENST00000520123 633 ntBASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 RASA4CP-201ENST00000424092 1398 ntBASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC28BQ9BUN5 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 AC079140.4-201ENST00000507448 529 ntBASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC28BQ9BUN5 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 AL354811.1-201ENST00000610286 706 ntBASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 TREX1-205ENST00000625293 1783 ntBASIC19.55■□□□□ 0.72
CCDC28BQ9BUN5 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms