Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL21A1Q96P44 AC005181.1-201ENST00000604782 1256 ntBASIC19.02■□□□□ 0.64
COL21A1Q96P44 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL21A1Q96P44 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.02■□□□□ 0.64
COL21A1Q96P44 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL21A1Q96P44 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.02■□□□□ 0.63
COL21A1Q96P44 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL21A1Q96P44 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
COL21A1Q96P44 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.02■□□□□ 0.63
COL21A1Q96P44 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.01■□□□□ 0.63
COL21A1Q96P44 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.01■□□□□ 0.63
COL21A1Q96P44 AC092720.2-201ENST00000602388 1665 ntBASIC19.01■□□□□ 0.63
COL21A1Q96P44 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL21A1Q96P44 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL21A1Q96P44 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL21A1Q96P44 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL21A1Q96P44 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL21A1Q96P44 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL21A1Q96P44 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL21A1Q96P44 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL21A1Q96P44 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL21A1Q96P44 AFG3L1P-217ENST00000557444 2447 ntBASIC19.01■□□□□ 0.63
COL21A1Q96P44 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL21A1Q96P44 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL21A1Q96P44 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
COL21A1Q96P44 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.01■□□□□ 0.63
COL21A1Q96P44 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL21A1Q96P44 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL21A1Q96P44 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.01■□□□□ 0.63
COL21A1Q96P44 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL21A1Q96P44 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.01■□□□□ 0.63
COL21A1Q96P44 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.01■□□□□ 0.63
COL21A1Q96P44 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.01■□□□□ 0.63
COL21A1Q96P44 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.01■□□□□ 0.63
COL21A1Q96P44 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.01■□□□□ 0.63
COL21A1Q96P44 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL21A1Q96P44 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
COL21A1Q96P44 AC112907.3-201ENST00000577781 2400 ntBASIC19.01■□□□□ 0.63
COL21A1Q96P44 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
COL21A1Q96P44 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.01■□□□□ 0.63
COL21A1Q96P44 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19■□□□□ 0.63
COL21A1Q96P44 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19■□□□□ 0.63
COL21A1Q96P44 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19■□□□□ 0.63
COL21A1Q96P44 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
COL21A1Q96P44 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19■□□□□ 0.63
COL21A1Q96P44 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19■□□□□ 0.63
COL21A1Q96P44 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19■□□□□ 0.63
COL21A1Q96P44 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
COL21A1Q96P44 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
COL21A1Q96P44 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19■□□□□ 0.63
COL21A1Q96P44 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
COL21A1Q96P44 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
COL21A1Q96P44 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19■□□□□ 0.63
COL21A1Q96P44 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19■□□□□ 0.63
COL21A1Q96P44 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL21A1Q96P44 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
COL21A1Q96P44 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL21A1Q96P44 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL21A1Q96P44 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.99■□□□□ 0.63
COL21A1Q96P44 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.99■□□□□ 0.63
COL21A1Q96P44 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.99■□□□□ 0.63
COL21A1Q96P44 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.99■□□□□ 0.63
COL21A1Q96P44 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL21A1Q96P44 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
COL21A1Q96P44 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL21A1Q96P44 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.99■□□□□ 0.63
COL21A1Q96P44 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.99■□□□□ 0.63
COL21A1Q96P44 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL21A1Q96P44 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL21A1Q96P44 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL21A1Q96P44 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL21A1Q96P44 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
COL21A1Q96P44 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.98■□□□□ 0.63
COL21A1Q96P44 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
COL21A1Q96P44 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL21A1Q96P44 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.98■□□□□ 0.63
COL21A1Q96P44 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
COL21A1Q96P44 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL21A1Q96P44 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL21A1Q96P44 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.98■□□□□ 0.63
COL21A1Q96P44 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.98■□□□□ 0.63
COL21A1Q96P44 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms