Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SKA1Q96BD8 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.65■□□□□ 0.9
SKA1Q96BD8 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SKA1Q96BD8 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
SKA1Q96BD8 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SKA1Q96BD8 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
SKA1Q96BD8 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
SKA1Q96BD8 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SKA1Q96BD8 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SKA1Q96BD8 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.64■□□□□ 0.9
SKA1Q96BD8 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.64■□□□□ 0.89
SKA1Q96BD8 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SKA1Q96BD8 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
SKA1Q96BD8 PRORSD1P-201ENST00000295112 541 ntBASIC20.64■□□□□ 0.89
SKA1Q96BD8 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SKA1Q96BD8 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SKA1Q96BD8 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.64■□□□□ 0.89
SKA1Q96BD8 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.64■□□□□ 0.89
SKA1Q96BD8 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SKA1Q96BD8 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.64■□□□□ 0.89
SKA1Q96BD8 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.64■□□□□ 0.89
SKA1Q96BD8 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.64■□□□□ 0.89
SKA1Q96BD8 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
SKA1Q96BD8 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SKA1Q96BD8 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.64■□□□□ 0.89
SKA1Q96BD8 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SKA1Q96BD8 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.64■□□□□ 0.89
SKA1Q96BD8 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SKA1Q96BD8 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.64■□□□□ 0.89
SKA1Q96BD8 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SKA1Q96BD8 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SKA1Q96BD8 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
SKA1Q96BD8 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SKA1Q96BD8 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SKA1Q96BD8 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SKA1Q96BD8 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SKA1Q96BD8 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SKA1Q96BD8 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SKA1Q96BD8 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
SKA1Q96BD8 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SKA1Q96BD8 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.63■□□□□ 0.89
SKA1Q96BD8 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.63■□□□□ 0.89
SKA1Q96BD8 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.63■□□□□ 0.89
SKA1Q96BD8 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SKA1Q96BD8 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
SKA1Q96BD8 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SKA1Q96BD8 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
SKA1Q96BD8 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SKA1Q96BD8 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SKA1Q96BD8 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.63■□□□□ 0.89
SKA1Q96BD8 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.62■□□□□ 0.89
SKA1Q96BD8 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.62■□□□□ 0.89
SKA1Q96BD8 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
SKA1Q96BD8 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SKA1Q96BD8 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SKA1Q96BD8 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.62■□□□□ 0.89
SKA1Q96BD8 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.62■□□□□ 0.89
SKA1Q96BD8 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.62■□□□□ 0.89
SKA1Q96BD8 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SKA1Q96BD8 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.61■□□□□ 0.89
SKA1Q96BD8 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SKA1Q96BD8 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SKA1Q96BD8 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.61■□□□□ 0.89
SKA1Q96BD8 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.61■□□□□ 0.89
SKA1Q96BD8 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
SKA1Q96BD8 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SKA1Q96BD8 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SKA1Q96BD8 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SKA1Q96BD8 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SKA1Q96BD8 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.61■□□□□ 0.89
SKA1Q96BD8 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.61■□□□□ 0.89
SKA1Q96BD8 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SKA1Q96BD8 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SKA1Q96BD8 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.61■□□□□ 0.89
SKA1Q96BD8 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.61■□□□□ 0.89
SKA1Q96BD8 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
SKA1Q96BD8 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.61■□□□□ 0.89
SKA1Q96BD8 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SKA1Q96BD8 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SKA1Q96BD8 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SKA1Q96BD8 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SKA1Q96BD8 PLK5-205ENST00000642079 1969 ntBASIC20.6■□□□□ 0.89
SKA1Q96BD8 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SKA1Q96BD8 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms