Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
ATG4AQ8WYN0 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATG4AQ8WYN0 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATG4AQ8WYN0 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATG4AQ8WYN0 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATG4AQ8WYN0 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ATG4AQ8WYN0 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
ATG4AQ8WYN0 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
ATG4AQ8WYN0 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
ATG4AQ8WYN0 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 CDV3P1-201ENST00000471403 739 ntBASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 AC116562.4-201ENST00000641316 2276 ntBASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ATG4AQ8WYN0 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 BX119927.1-201ENST00000636596 1552 ntBASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.88■□□□□ 0.93
ATG4AQ8WYN0 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 AC087289.5-201ENST00000586076 3175 ntBASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.87■□□□□ 0.93
ATG4AQ8WYN0 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
ATG4AQ8WYN0 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 NTF6G-201ENST00000591094 616 ntBASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
ATG4AQ8WYN0 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms