Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
COL4A5P29400 GOLGA2P6-201ENST00000340929 2049 ntBASIC24.45■■□□□ 1.5
COL4A5P29400 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL4A5P29400 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL4A5P29400 KRT18P22-201ENST00000402024 1347 ntBASIC24.45■■□□□ 1.5
COL4A5P29400 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL4A5P29400 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL4A5P29400 PRR31-201ENST00000371629 978 ntTSL 2 BASIC24.45■■□□□ 1.5
COL4A5P29400 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
COL4A5P29400 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL4A5P29400 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
COL4A5P29400 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
COL4A5P29400 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL4A5P29400 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC24.45■■□□□ 1.5
COL4A5P29400 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC24.45■■□□□ 1.5
COL4A5P29400 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
COL4A5P29400 KRT16P1-201ENST00000399124 1418 ntBASIC24.44■■□□□ 1.5
COL4A5P29400 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC24.44■■□□□ 1.5
COL4A5P29400 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL4A5P29400 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL4A5P29400 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
COL4A5P29400 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC24.44■■□□□ 1.5
COL4A5P29400 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A5P29400 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC24.43■■□□□ 1.5
COL4A5P29400 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A5P29400 AL137013.1-201ENST00000432946 1228 ntBASIC24.43■■□□□ 1.5
COL4A5P29400 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
COL4A5P29400 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC24.43■■□□□ 1.5
COL4A5P29400 MIR2861-201ENST00000636310 90 ntBASIC24.43■■□□□ 1.5
COL4A5P29400 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A5P29400 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A5P29400 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A5P29400 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC24.43■■□□□ 1.5
COL4A5P29400 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC24.43■■□□□ 1.5
COL4A5P29400 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A5P29400 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A5P29400 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC24.43■■□□□ 1.5
COL4A5P29400 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL4A5P29400 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC24.43■■□□□ 1.5
COL4A5P29400 CR392000.1-201ENST00000624770 1228 ntBASIC24.43■■□□□ 1.5
COL4A5P29400 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A5P29400 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A5P29400 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A5P29400 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A5P29400 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A5P29400 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A5P29400 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC24.42■■□□□ 1.5
COL4A5P29400 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
COL4A5P29400 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
COL4A5P29400 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A5P29400 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A5P29400 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL4A5P29400 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A5P29400 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A5P29400 KSR1P1-201ENST00000446298 240 ntBASIC24.41■■□□□ 1.5
COL4A5P29400 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
COL4A5P29400 AC004264.1-201ENST00000608354 794 ntBASIC24.41■■□□□ 1.5
COL4A5P29400 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC24.41■■□□□ 1.5
COL4A5P29400 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC24.41■■□□□ 1.5
COL4A5P29400 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A5P29400 AC011484.1-201ENST00000377652 1995 ntBASIC24.41■■□□□ 1.5
COL4A5P29400 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A5P29400 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A5P29400 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
COL4A5P29400 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL4A5P29400 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC24.41■■□□□ 1.5
COL4A5P29400 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC24.41■■□□□ 1.5
COL4A5P29400 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL4A5P29400 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC24.4■■□□□ 1.5
COL4A5P29400 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC24.4■■□□□ 1.5
COL4A5P29400 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
COL4A5P29400 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL4A5P29400 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
COL4A5P29400 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
COL4A5P29400 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL4A5P29400 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC24.4■■□□□ 1.5
COL4A5P29400 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
COL4A5P29400 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC24.4■■□□□ 1.5
COL4A5P29400 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC24.4■■□□□ 1.5
COL4A5P29400 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
COL4A5P29400 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
COL4A5P29400 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC24.4■■□□□ 1.5
COL4A5P29400 LTBR-211ENST00000543190 785 ntTSL 3 BASIC24.4■■□□□ 1.5
COL4A5P29400 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC24.4■■□□□ 1.5
COL4A5P29400 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
COL4A5P29400 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
COL4A5P29400 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC24.4■■□□□ 1.5
COL4A5P29400 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
COL4A5P29400 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL4A5P29400 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
COL4A5P29400 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.5
COL4A5P29400 AC027702.1-201ENST00000563810 1770 ntBASIC24.39■■□□□ 1.5
COL4A5P29400 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
COL4A5P29400 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC24.39■■□□□ 1.49
COL4A5P29400 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
COL4A5P29400 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.49
COL4A5P29400 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC24.39■■□□□ 1.49
COL4A5P29400 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC24.39■■□□□ 1.49
COL4A5P29400 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
COL4A5P29400 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms