Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
COL5A3P25940 AC004264.1-201ENST00000608354 794 ntBASIC25.68■■□□□ 1.7
COL5A3P25940 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL5A3P25940 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL5A3P25940 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL5A3P25940 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL5A3P25940 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL5A3P25940 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC25.67■■□□□ 1.7
COL5A3P25940 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
COL5A3P25940 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL5A3P25940 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
COL5A3P25940 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
COL5A3P25940 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC25.67■■□□□ 1.7
COL5A3P25940 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL5A3P25940 AP002982.1-201ENST00000492365 877 ntBASIC25.67■■□□□ 1.7
COL5A3P25940 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC25.67■■□□□ 1.7
COL5A3P25940 NME3-204ENST00000563498 920 ntTSL 2 BASIC25.67■■□□□ 1.7
COL5A3P25940 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL5A3P25940 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
COL5A3P25940 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
COL5A3P25940 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL5A3P25940 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL5A3P25940 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
COL5A3P25940 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL5A3P25940 DYM-203ENST00000442713 2147 ntTSL 2 BASIC25.66■■□□□ 1.7
COL5A3P25940 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL5A3P25940 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL5A3P25940 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL5A3P25940 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL5A3P25940 MIR1238-201ENST00000408483 83 ntBASIC25.66■■□□□ 1.7
COL5A3P25940 KSR1P1-201ENST00000446298 240 ntBASIC25.66■■□□□ 1.7
COL5A3P25940 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
COL5A3P25940 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC25.66■■□□□ 1.7
COL5A3P25940 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC25.66■■□□□ 1.7
COL5A3P25940 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL5A3P25940 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL5A3P25940 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC25.66■■□□□ 1.7
COL5A3P25940 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC25.66■■□□□ 1.7
COL5A3P25940 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC25.66■■□□□ 1.7
COL5A3P25940 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
COL5A3P25940 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL5A3P25940 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL5A3P25940 LINC01568-207ENST00000641790 1380 ntBASIC25.65■■□□□ 1.7
COL5A3P25940 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL5A3P25940 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL5A3P25940 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC25.65■■□□□ 1.7
COL5A3P25940 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL5A3P25940 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL5A3P25940 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL5A3P25940 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
COL5A3P25940 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL5A3P25940 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL5A3P25940 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL5A3P25940 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC25.65■■□□□ 1.7
COL5A3P25940 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC25.65■■□□□ 1.7
COL5A3P25940 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
COL5A3P25940 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
COL5A3P25940 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
COL5A3P25940 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
COL5A3P25940 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC25.64■■□□□ 1.7
COL5A3P25940 FITM1-202ENST00000559294 800 ntBASIC25.64■■□□□ 1.7
COL5A3P25940 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
COL5A3P25940 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC25.64■■□□□ 1.69
COL5A3P25940 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC25.64■■□□□ 1.69
COL5A3P25940 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
COL5A3P25940 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC25.63■■□□□ 1.69
COL5A3P25940 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
COL5A3P25940 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
COL5A3P25940 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC25.63■■□□□ 1.69
COL5A3P25940 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC25.63■■□□□ 1.69
COL5A3P25940 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC25.63■■□□□ 1.69
COL5A3P25940 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
COL5A3P25940 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL5A3P25940 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
COL5A3P25940 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
COL5A3P25940 AC026271.3-201ENST00000571884 352 ntBASIC25.63■■□□□ 1.69
COL5A3P25940 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
COL5A3P25940 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL5A3P25940 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC25.62■■□□□ 1.69
COL5A3P25940 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL5A3P25940 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL5A3P25940 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
COL5A3P25940 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL5A3P25940 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL5A3P25940 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC25.62■■□□□ 1.69
COL5A3P25940 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
COL5A3P25940 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
COL5A3P25940 AC233723.2-201ENST00000623798 2106 ntBASIC25.62■■□□□ 1.69
COL5A3P25940 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC25.61■■□□□ 1.69
COL5A3P25940 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC25.61■■□□□ 1.69
COL5A3P25940 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC25.61■■□□□ 1.69
COL5A3P25940 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC25.61■■□□□ 1.69
COL5A3P25940 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC25.61■■□□□ 1.69
COL5A3P25940 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
COL5A3P25940 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL5A3P25940 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC25.61■■□□□ 1.69
COL5A3P25940 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC25.61■■□□□ 1.69
COL5A3P25940 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC25.6■■□□□ 1.69
COL5A3P25940 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC25.6■■□□□ 1.69
COL5A3P25940 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 10 ms