Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1BO60663 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC17.71■□□□□ 0.43
LMX1BO60663 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.71■□□□□ 0.43
LMX1BO60663 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LMX1BO60663 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LMX1BO60663 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
LMX1BO60663 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1BO60663 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1BO60663 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1BO60663 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1BO60663 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.7■□□□□ 0.42
LMX1BO60663 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1BO60663 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC17.7■□□□□ 0.42
LMX1BO60663 AC069152.1-201ENST00000438030 544 ntBASIC17.7■□□□□ 0.42
LMX1BO60663 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1BO60663 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.7■□□□□ 0.42
LMX1BO60663 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.7■□□□□ 0.42
LMX1BO60663 AC120498.10-201ENST00000621827 505 ntBASIC17.7■□□□□ 0.42
LMX1BO60663 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1BO60663 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1BO60663 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1BO60663 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LMX1BO60663 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
LMX1BO60663 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.69■□□□□ 0.42
LMX1BO60663 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.69■□□□□ 0.42
LMX1BO60663 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.69■□□□□ 0.42
LMX1BO60663 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LMX1BO60663 AC116050.2-201ENST00000612102 1779 ntBASIC17.69■□□□□ 0.42
LMX1BO60663 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1BO60663 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1BO60663 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.69■□□□□ 0.42
LMX1BO60663 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.69■□□□□ 0.42
LMX1BO60663 AC105036.2-201ENST00000569468 176 ntBASIC17.69■□□□□ 0.42
LMX1BO60663 FGF8-207ENST00000618991 856 ntTSL 3 BASIC17.69■□□□□ 0.42
LMX1BO60663 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LMX1BO60663 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1BO60663 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1BO60663 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1BO60663 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1BO60663 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1BO60663 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1BO60663 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1BO60663 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LMX1BO60663 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.69■□□□□ 0.42
LMX1BO60663 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
LMX1BO60663 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
LMX1BO60663 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 TCF3P1-201ENST00000423021 1937 ntBASIC17.68■□□□□ 0.42
LMX1BO60663 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
LMX1BO60663 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC17.68■□□□□ 0.42
LMX1BO60663 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.68■□□□□ 0.42
LMX1BO60663 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.68■□□□□ 0.42
LMX1BO60663 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
LMX1BO60663 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.68■□□□□ 0.42
LMX1BO60663 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LMX1BO60663 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.68■□□□□ 0.42
LMX1BO60663 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LMX1BO60663 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LMX1BO60663 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1BO60663 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1BO60663 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.67■□□□□ 0.42
LMX1BO60663 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1BO60663 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.67■□□□□ 0.42
LMX1BO60663 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1BO60663 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1BO60663 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.67■□□□□ 0.42
LMX1BO60663 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1BO60663 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
LMX1BO60663 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.67■□□□□ 0.42
LMX1BO60663 MIR4651-201ENST00000582622 73 ntBASIC17.67■□□□□ 0.42
LMX1BO60663 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.67■□□□□ 0.42
LMX1BO60663 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.67■□□□□ 0.42
LMX1BO60663 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
LMX1BO60663 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
LMX1BO60663 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.67■□□□□ 0.42
LMX1BO60663 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1BO60663 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1BO60663 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1BO60663 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
LMX1BO60663 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LMX1BO60663 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.66■□□□□ 0.42
LMX1BO60663 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.66■□□□□ 0.42
LMX1BO60663 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
LMX1BO60663 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms