Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 CAHM-201ENST00000604200 896 ntBASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 MIR219A2-201ENST00000608502 1504 ntBASIC11.25□□□□□ -0.61
CHKB-CPT1BH3BT56 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 TUB-203ENST00000534099 1759 ntTSL 2 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 AC008894.3-201ENST00000624324 3103 ntBASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC11.24□□□□□ -0.61
CHKB-CPT1BH3BT56 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 SBF1P1-201ENST00000444527 5631 ntBASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CHKB-CPT1BH3BT56 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms