Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC53A6NM62 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.74■■□□□ 1.07
LRRC53A6NM62 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC53A6NM62 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC53A6NM62 TERF1P5-201ENST00000477545 1207 ntBASIC21.74■■□□□ 1.07
LRRC53A6NM62 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.74■■□□□ 1.07
LRRC53A6NM62 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC53A6NM62 NTF6G-201ENST00000591094 616 ntBASIC21.74■■□□□ 1.07
LRRC53A6NM62 AC010536.3-201ENST00000620306 533 ntBASIC21.74■■□□□ 1.07
LRRC53A6NM62 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC53A6NM62 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC53A6NM62 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC53A6NM62 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC53A6NM62 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
LRRC53A6NM62 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC53A6NM62 AC087633.2-202ENST00000565166 1439 ntBASIC21.73■■□□□ 1.07
LRRC53A6NM62 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
LRRC53A6NM62 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
LRRC53A6NM62 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.73■■□□□ 1.07
LRRC53A6NM62 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
LRRC53A6NM62 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC53A6NM62 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
LRRC53A6NM62 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC21.73■■□□□ 1.07
LRRC53A6NM62 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.73■■□□□ 1.07
LRRC53A6NM62 AL356652.1-201ENST00000615962 565 ntBASIC21.73■■□□□ 1.07
LRRC53A6NM62 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC53A6NM62 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.73■■□□□ 1.07
LRRC53A6NM62 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC53A6NM62 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.73■■□□□ 1.07
LRRC53A6NM62 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC53A6NM62 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.73■■□□□ 1.07
LRRC53A6NM62 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC53A6NM62 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC53A6NM62 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LRRC53A6NM62 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC53A6NM62 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.72■■□□□ 1.07
LRRC53A6NM62 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
LRRC53A6NM62 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC53A6NM62 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.72■■□□□ 1.07
LRRC53A6NM62 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LRRC53A6NM62 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
LRRC53A6NM62 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.72■■□□□ 1.07
LRRC53A6NM62 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
LRRC53A6NM62 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.72■■□□□ 1.07
LRRC53A6NM62 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.72■■□□□ 1.07
LRRC53A6NM62 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.72■■□□□ 1.07
LRRC53A6NM62 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.72■■□□□ 1.07
LRRC53A6NM62 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
LRRC53A6NM62 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.72■■□□□ 1.07
LRRC53A6NM62 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
LRRC53A6NM62 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC53A6NM62 CYP21A1P-202ENST00000354927 1481 ntBASIC21.71■■□□□ 1.07
LRRC53A6NM62 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC53A6NM62 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC53A6NM62 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC53A6NM62 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
LRRC53A6NM62 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
LRRC53A6NM62 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.71■■□□□ 1.07
LRRC53A6NM62 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
LRRC53A6NM62 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.71■■□□□ 1.07
LRRC53A6NM62 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC53A6NM62 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRC53A6NM62 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.71■■□□□ 1.07
LRRC53A6NM62 AC116562.4-201ENST00000641316 2276 ntBASIC21.71■■□□□ 1.07
LRRC53A6NM62 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC53A6NM62 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC53A6NM62 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC53A6NM62 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC53A6NM62 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.7■■□□□ 1.06
LRRC53A6NM62 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC53A6NM62 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
LRRC53A6NM62 AL591742.1-201ENST00000604433 565 ntBASIC21.7■■□□□ 1.06
LRRC53A6NM62 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC53A6NM62 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC53A6NM62 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
LRRC53A6NM62 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC53A6NM62 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC53A6NM62 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
LRRC53A6NM62 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
LRRC53A6NM62 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LRRC53A6NM62 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRRC53A6NM62 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
LRRC53A6NM62 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRRC53A6NM62 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.69■■□□□ 1.06
LRRC53A6NM62 PGM5P4-201ENST00000421970 445 ntBASIC21.69■■□□□ 1.06
LRRC53A6NM62 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LRRC53A6NM62 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.69■■□□□ 1.06
LRRC53A6NM62 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.69■■□□□ 1.06
LRRC53A6NM62 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.69■■□□□ 1.06
LRRC53A6NM62 AC016405.3-201ENST00000607710 860 ntBASIC21.69■■□□□ 1.06
LRRC53A6NM62 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.69■■□□□ 1.06
LRRC53A6NM62 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.69■■□□□ 1.06
LRRC53A6NM62 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRRC53A6NM62 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LRRC53A6NM62 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LRRC53A6NM62 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
LRRC53A6NM62 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.69■■□□□ 1.06
LRRC53A6NM62 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.69■■□□□ 1.06
LRRC53A6NM62 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LRRC53A6NM62 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms